Miyakogusa Predicted Gene

Lj3g3v0930320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0930320.1 tr|G7K6L7|G7K6L7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g017060 PE=3 SV=1,85.52,0,DNA/RNA polymerases,NULL;
zf-DNA_Pol,Zinc finger, DNA-directed DNA polymerase, family B, alpha;
DNA_,CUFF.41632.1
         (359 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 | 2...   662   0.0  
Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC | ...    49   1e-05
Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC | ...    49   1e-05

>Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 |
            20130731
          Length = 1526

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/359 (86%), Positives = 330/359 (91%), Gaps = 1/359 (0%)

Query: 1    MRNGQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY 60
            MRNGQV LEKYVITKTLTK PEAYPDAKNQPHVLVAQRLKQQGY+SGCSVGDTIPY+IC 
Sbjct: 1169 MRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYVICC 1228

Query: 61   EQGGSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERL 120
            EQGGSSGSA GIA RARHPDELKQE+GTWLIDIDYYLSQQIHPV+SRLCASIQGTSPERL
Sbjct: 1229 EQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVISRLCASIQGTSPERL 1288

Query: 121  ADCLGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLSCPSCSGTIDCPPVF 180
            ADCLGLDTSKFQHKSSEAS  DPTSSL+FA DDEERY+GCE LVLSCPSCS   DCPPVF
Sbjct: 1289 ADCLGLDTSKFQHKSSEASD-DPTSSLLFAGDDEERYRGCESLVLSCPSCSSVFDCPPVF 1347

Query: 181  KSVCLSVNEKPSSSGTEESDYNFWRKLCCPKYQENGVGRISPAMIANQVKMQAEKFVLMY 240
            KS+C+  NEKP+SSGT+ESDYNFWRKLCCPK  ENG GRIS AMIANQVK QAEKFVLMY
Sbjct: 1348 KSICMLGNEKPTSSGTDESDYNFWRKLCCPKCFENGAGRISAAMIANQVKRQAEKFVLMY 1407

Query: 241  YRGSLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLYRKYTEADLYKQLSYFC 300
            YRG LMCDDETCKHTTRS+S RLVGDSERGTVCPNYPRCNG L RKYTEADLYKQLSYFC
Sbjct: 1408 YRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFC 1467

Query: 301  HVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDRCAYGWVKLEDLVISI 359
            HVFDT   IEK+E KSRIP+EKELIKIRPIVD  AST+QK+RDRCA+GWVKL+DLV++I
Sbjct: 1468 HVFDTVCYIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVAI 1526


>Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC |
            chr3:44150897-44134651 | 20130731
          Length = 1086

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 22/174 (12%)

Query: 4    GQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQG 63
             ++ L   VITK LTK  + Y       HV +A+R++++  ++  +VGD +PY+I     
Sbjct: 860  NRMDLSLLVITKGLTKTGDDYE--VKTAHVELAERMRKRDAATAPNVGDRVPYVII---- 913

Query: 64   GSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADC 123
                +AKG     R  D +   +    ID  YYL  QI   + R+   I   + + L   
Sbjct: 914  ---KAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHG 970

Query: 124  LGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLS-----CPSCSG 172
                     H  S + S    S +M  A  +    GC+ L+ +     C  C G
Sbjct: 971  --------SHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIHCKG 1016


>Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC |
            chr3:44150897-44133139 | 20130731
          Length = 1086

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 22/174 (12%)

Query: 4    GQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQG 63
             ++ L   VITK LTK  + Y       HV +A+R++++  ++  +VGD +PY+I     
Sbjct: 860  NRMDLSLLVITKGLTKTGDDYE--VKTAHVELAERMRKRDAATAPNVGDRVPYVII---- 913

Query: 64   GSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADC 123
                +AKG     R  D +   +    ID  YYL  QI   + R+   I   + + L   
Sbjct: 914  ---KAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHG 970

Query: 124  LGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLS-----CPSCSG 172
                     H  S + S    S +M  A  +    GC+ L+ +     C  C G
Sbjct: 971  --------SHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIHCKG 1016