Miyakogusa Predicted Gene

Lj3g3v0930310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0930310.1 Non Characterized Hit- tr|F6HLJ3|F6HLJ3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.88,6e-19,seg,NULL; VQ,VQ,CUFF.41630.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g061720.1 | VQ motif protein | HC | chr2:26183236-26182404...   146   8e-36
Medtr1g054055.1 | VQ motif protein | HC | chr1:23040618-23041237...    71   4e-13

>Medtr2g061720.1 | VQ motif protein | HC | chr2:26183236-26182404 |
           20130731
          Length = 157

 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 91/136 (66%), Gaps = 15/136 (11%)

Query: 15  KLGIDRDSHVISKLKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPEDEXXXXXXXXXX 74
           KLG+D+DS VISK+KPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPE+           
Sbjct: 16  KLGVDKDSQVISKVKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPEEHERGGARSKSK 75

Query: 75  XX-------------XMMIMQEDEKEFLSLQNGTEVKNEHQIQEEDAMWRRPKSNEKFSD 121
                            MIMQ+DEK+FLSLQNG  VK     +E   +WRR KSNEKF+ 
Sbjct: 76  TAPPPSKGSMDLNLEKAMIMQKDEKDFLSLQNGISVKKNENEEE--EIWRRSKSNEKFNG 133

Query: 122 LFEGFSEFDGFMEVLS 137
             +GFSE DGFM+ LS
Sbjct: 134 FLDGFSELDGFMDELS 149


>Medtr1g054055.1 | VQ motif protein | HC | chr1:23040618-23041237
          | 20130731
          Length = 151

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 28 LKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPEDE 64
          +KPKIRIIH+YAPEIIKTDA NFRELVQ+LTGKP +E
Sbjct: 1  MKPKIRIIHVYAPEIIKTDAENFRELVQKLTGKPSEE 37