Miyakogusa Predicted Gene

Lj3g3v0916990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0916990.1 Non Characterized Hit- tr|K3YGP0|K3YGP0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si013408,45.93,1e-18,seg,NULL; bromo domain,Bromodomain;
CG13597-PA,NULL; FALZ-RELATED BROMODOMAIN-CONTAINING
PROTEINS,NU,CUFF.41613.1
         (384 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g060760.1 | DNA-binding bromodomain protein, putative | HC...   303   2e-82
Medtr2g012600.1 | bromodomain protein | LC | chr2:3171410-316116...    64   3e-10

>Medtr2g060760.1 | DNA-binding bromodomain protein, putative | HC |
           chr2:25780657-25773055 | 20130731
          Length = 719

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 193/374 (51%), Positives = 223/374 (59%), Gaps = 11/374 (2%)

Query: 1   MVKSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSS 60
           +VKSEPL GV E+IK H+  SLFERRLE  +D DRYK TV++HVDLETIQLR+Q+G YSS
Sbjct: 339 VVKSEPLFGVLEMIKRHQKFSLFERRLEKNQDLDRYKNTVKRHVDLETIQLRVQEGHYSS 398

Query: 61  CTSAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSHGXXXXXXXXXXXXXXX 120
            T+ FF DL+ LF+NATVFF  GS E RAAQQL  +++ EM++ G               
Sbjct: 399 GTNTFFLDLVTLFSNATVFFSRGSPELRAAQQLRRLILDEMKTFGQAQSNTITQKSDSLP 458

Query: 121 XNAPPAKPDSLLSKHQASAPILVCRKRSSISAKASPATSGQKSDTQTIANDKKEKPPSDA 180
            N P ++PDS LSKH+   PILVCRKRSSI  K S  T   K D + I NDKKE+P SD 
Sbjct: 459 PNTPLSRPDS-LSKHK--PPILVCRKRSSIPVKPSTTTFSHKGDHKPIINDKKERPSSDV 515

Query: 181 KPPLKPSNSETDEEEAPKTKEKPVTTGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KP LKPS SETDEEE PK KEKPV TGAR                               
Sbjct: 516 KPTLKPSYSETDEEEPPKAKEKPV-TGAR--SRRSNKNLSSNASNKKPPSNSTPRTGSSA 572

Query: 241 XXXXXXXXXXXXAEPVPEKKR-NAAADFLKRIKRNTSVEAL---XXXXXXXXXXXXXXXX 296
                       AE V +KK+ N AA FL RIK+N SVE L                   
Sbjct: 573 NKPAETPKLKNKAEGVSDKKKNNGAAGFLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGG 632

Query: 297 XXXXVKEQKKPVNSAKGDKGKEKASRNNNEGGPGSGDKRSKNTAENSKRSVGRPPKKAAE 356
                KEQKK VN+ KG+KGKE+ASR N+ GG GSGDKR+KN   NSKR+VGRPPKKAAE
Sbjct: 633 GGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSGDKRNKNIESNSKRNVGRPPKKAAE 692

Query: 357 TTPVSAKRGRESGA 370
           T   S KRGRES A
Sbjct: 693 TV-ASTKRGRESSA 705


>Medtr2g012600.1 | bromodomain protein | LC | chr2:3171410-3161169 |
           20130731
          Length = 747

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 2/99 (2%)

Query: 4   SEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSCTS 63
           +E ++ + + I   E  S F RRL+ Q+   +YK+ +++H+D +TI+ R+   +  S T 
Sbjct: 543 AEDMIKILDSIFETEGASAFRRRLDGQKRG-KYKKMIQKHMDFDTIRSRISSRTIES-TR 600

Query: 64  AFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMR 102
             +RDLLLL  NA VF+ + + E + A  L  IV  +MR
Sbjct: 601 ELYRDLLLLTNNALVFYSKITHEYKTALLLRGIVAKKMR 639