Miyakogusa Predicted Gene

Lj3g3v0896950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0896950.1 Non Characterized Hit- tr|C0HDR7|C0HDR7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,39.89,3e-16,coiled-coil,NULL; seg,NULL,CUFF.41621.1
         (357 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g026250.1 | Serine/Threonine kinase family protein | HC | ...   394   e-110

>Medtr3g026250.1 | Serine/Threonine kinase family protein | HC |
           chr3:8083864-8078558 | 20130731
          Length = 678

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/325 (65%), Positives = 240/325 (73%), Gaps = 17/325 (5%)

Query: 37  FWSTQHANDSLVPEEKSKPIYDEPSSQHMSSKHDRVHLENDQVPKKINTNKGGTTQTHTV 96
           FWST HA DS VPEEK KP+YDE  S H      RV  +NDQ+PK ++TNK   +QT TV
Sbjct: 367 FWSTLHAKDSRVPEEKGKPVYDEERSSH-----HRVRPDNDQLPKNVSTNKVTNSQTQTV 421

Query: 97  KSSVHGKPHKPDTKSSKDFEINFFQDKDNANQRRVSNMEN-NTNFQDQAFNTFVAEFDTT 155
           KSS+HGK HKP+  SSKDFEINFF DK +AN++++SN+E  N NFQDQ+FNTFVAEFDT 
Sbjct: 422 KSSIHGKLHKPEAVSSKDFEINFFPDKGHANEKQMSNLEKKNNNFQDQSFNTFVAEFDTA 481

Query: 156 KLNSGLGNKSXXXXXXXXXXXXXXXQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQ 215
           KL+SG GNKS               QLKEANLEK+EIT+KYEKL+AICRSQRQELQDLKQ
Sbjct: 482 KLSSGHGNKSTREEALESEVEKLREQLKEANLEKSEITAKYEKLTAICRSQRQELQDLKQ 541

Query: 216 ALATRTPSQSREGLKTSPGITSSPSELQRQKIGGTAESELKTPSSEPK-SWQAFPEEPGP 274
            LA +TPS SREG +TSPG+ SS S   R        SE KTPSSEPK SWQ F EE  P
Sbjct: 542 TLAAKTPSPSREGFRTSPGVASSASSQDR--------SEWKTPSSEPKSSWQPFSEESEP 593

Query: 275 VKSLSADNATKSVRTKNGPQNKQPTQLASDFDSWGFGADKFSAVRA--GSPQMPRPGEGS 332
            KSLSADNA+KSVR++NG Q+K  TQ A+DFDSWGFGAD FSA RA  GSPQMPRPGEGS
Sbjct: 594 FKSLSADNASKSVRSRNGQQSKPATQPAADFDSWGFGADTFSAARAGSGSPQMPRPGEGS 653

Query: 333 KAQLFGNPKASESKSASQPAGWAGF 357
            A +F   K  ESKS SQPAGWAGF
Sbjct: 654 TAHVFREAKGFESKSTSQPAGWAGF 678