Miyakogusa Predicted Gene

Lj3g3v0883710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0883710.1 Non Characterized Hit- tr|I1I2F3|I1I2F3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,30.9,1e-18,seg,NULL; Rad21_Rec8,Rad21/Rec8-like protein,
C-terminal, eukaryotic; no description,Rad21/Rec8-like,CUFF.41591.1
         (347 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC | chr...   237   1e-62
Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC | chr...    67   3e-11
Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC | chr...    59   7e-09

>Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC |
           chr3:375395-369758 | 20130731
          Length = 701

 Score =  237 bits (605), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 158/354 (44%), Positives = 207/354 (58%), Gaps = 33/354 (9%)

Query: 1   MRDALNNPRNIIRKRRDLPGSSLGAWKLNNSQRKENMFDQPLITGLCQDLLDISQTDYIR 60
           M+ ALN+ RNI R+RRD+  ++LGAW+L + + KE +FDQPL TG+C +LL+I + +YI 
Sbjct: 374 MKRALNDTRNIRRRRRDV--TTLGAWELKSKRFKEGVFDQPLFTGICNELLNIQRREYIC 431

Query: 61  SRPHLIISEEDNADNGCGVTRTPPTNQIPEEPRAATPPVTASDMEIEHPATNQ---IPEE 117
           S+PHL+ISEED+ DN       PP NQ+ +EP      + A ++ ++ P T+    + +E
Sbjct: 432 SKPHLVISEEDHPDNTT--ITPPPINQVADEPI-----IDAPEIAVDEPTTDAPEIVVDE 484

Query: 118 PRAATPP-VNALDLE-IEQLRSVAATPSPTIPAHNVDIELNIEGDHRSPVGRDNMTPVSA 175
           P    P  VNA  +E IE +R VA     TIP  + + E  I   +RSPV     TP S 
Sbjct: 485 PITDAPEIVNASGVEDIEHIRDVADDQPATIPTQSKETEQIIPSAYRSPVKGGVATPTSV 544

Query: 176 HRLRSVSVSPLRTNNASETVQTPDVGTSLGAHGSEMETPMPRLDDTFQNFSLSDTHRXXX 235
                           SE +  P   TS  AH SE  T     D+  Q+   SDT++   
Sbjct: 545 ----------------SEGMDIPYGATSPRAHASETGTSSTYHDNILQSHDFSDTNQFIN 588

Query: 236 XXXXXXXXXXXMDNNTPA--SSQGTSRTTGTLSVRTRATAQYLKAHSPISPILEDPAVDL 293
                       D+ TPA  SSQ TSR+  TLS RTR  AQYLK +SP + I E PA D 
Sbjct: 589 SAGKDDLWFLEEDS-TPATASSQSTSRSIDTLSGRTRGLAQYLKDYSPCTTIPEQPAEDF 647

Query: 294 SLNKILEGKSRKISARMFYEVLVLKTHGLIDVHQKEPYDDISLKLMPSLSNAKL 347
           SLNKIL+GK+RKI+ARMF+EVLVLKTH LIDV Q+EPY DIS KL P+L  AK+
Sbjct: 648 SLNKILDGKTRKIAARMFFEVLVLKTHDLIDVQQEEPYGDISFKLTPALDKAKI 701


>Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC |
           chr7:10945596-10952129 | 20130731
          Length = 773

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 259 SRTTGTLSVRTRATAQYL-KAHSPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVL 317
           S+ +G  S RTR  A YL K+        E  +V+LS  ++ +G++RK SAR+FYE+LVL
Sbjct: 686 SKMSG-WSERTRKVASYLSKSFQDAGKQKESGSVNLS--QVSQGRTRKESARLFYEILVL 742

Query: 318 KTHGLIDVHQKEPYDDISLKLMPSL 342
           KT   +DV Q E Y DI++K +P L
Sbjct: 743 KTTNYVDVQQNEAYGDIAVKKLPKL 767


>Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC |
            chr7:30681072-30668024 | 20130731
          Length = 1371

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 253  ASSQGTSRTTGTLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISARMFY 312
            + ++GT       S RTRA A+YL+       +      +L L+ IL GK+RK ++RMF+
Sbjct: 1279 SGAEGTHLENSGWSSRTRAVAKYLQTLFDKEEL--HGRQNLHLDNILAGKTRKEASRMFF 1336

Query: 313  EVLVLKTHGLIDVHQKEPYDDISLK 337
            E LVLKT   + V Q +P+ +I+L+
Sbjct: 1337 ETLVLKTRDYVHVEQAKPFANINLQ 1361