Miyakogusa Predicted Gene

Lj3g3v0883700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0883700.1 tr|G7J066|G7J066_MEDTR Sister chromatid cohesion
1 protein OS=Medicago truncatula GN=MTR_3g005770
PE,31.82,0.003,seg,NULL; Rad21_Rec8_N,Rad21/Rec8-like protein,
N-terminal; COHESIN SUBUNIT RAD21,NULL; SCC1 / RAD21,CUFF.41590.1
         (439 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC | chr...   305   5e-83
Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC | chr...   156   5e-38
Medtr3g026750.1 | Rad21/Rec8-like protein, amine-terminal protei...    94   2e-19
Medtr5g081270.1 | sister chromatid cohesion 1 protein | HC | chr...    89   1e-17
Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC | chr...    86   6e-17
Medtr5g083120.1 | sister chromatid cohesion 1 protein, putative ...    59   6e-09

>Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC |
           chr3:375395-369758 | 20130731
          Length = 701

 Score =  305 bits (781), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 162/265 (61%), Positives = 185/265 (69%), Gaps = 16/265 (6%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYSQTFLARKGPLSTVWIAAHLQHRLKKS Y +TDIPSTVQHIMDPGVPIALRMS HLL
Sbjct: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSQYASTDIPSTVQHIMDPGVPIALRMSAHLL 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAI-QLTLPEDARQAPVQSITLPENFNLDAL 119
           LGVVRIYSKKVDYL +DCN+V T L K FA++   TLPEDARQAPV +IT+P  F+LDAL
Sbjct: 61  LGVVRIYSKKVDYLLNDCNLVRTVLYKVFASVSNNTLPEDARQAPVHTITMPATFDLDAL 120

Query: 120 NLGDDIDHNWVEDVHRRSQEDITLEDRNPVIMDHYVAISFDEDMVMDSSRTEVLPDSGER 179
           NLG +ID N  ED H RSQ++ITL DR+P+++D+YVAI FDED+    S  + LPDS  R
Sbjct: 121 NLGYEIDFNGYEDAHIRSQDEITLADRSPIVVDNYVAIRFDEDIPFSPSNAQPLPDSEAR 180

Query: 180 PMEEDTVPQSP-SMNVAGVQDRSPTVQITSPAIQHPGGDGPQNFQDPEATFPVSPSGNSP 238
           P EE+ +PQSP S  V  VQD  P+  I S    H   D    FQDP             
Sbjct: 181 PNEEEFIPQSPSSTRVVDVQDGGPSSHIESHTTSHTSDDNNHIFQDP------------- 227

Query: 239 TQATQAMPIEVLRDASNDPTQTTQT 263
               Q +P E LRD SND  +   T
Sbjct: 228 -VTKQTLPPESLRDPSNDAVENIPT 251


>Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC |
           chr7:30681072-30668024 | 20130731
          Length = 1371

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 100/147 (68%), Gaps = 3/147 (2%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYSQ  LA+KGPL T+WIAAHL+ +L+K+    TDI  +V  I+ P VPIALR+S HLL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLL 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQSITLPENFNLDALN 120
           LGVVRIYS+KV+YLF DC+  L  + +AF +  + LP +   AP  SITLPE F+LD   
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYNSITLPETFDLDDFE 120

Query: 121 L--GDDIDHNWVEDVHRRSQEDITLED 145
           L   D    N+V D H  S+E ITL+D
Sbjct: 121 LPDSDIFQGNYV-DRHVSSKEQITLQD 146


>Medtr3g026750.1 | Rad21/Rec8-like protein, amine-terminal protein |
           LC | chr3:8233666-8232118 | 20130731
          Length = 195

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 8/105 (7%)

Query: 23  LQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLLLGVVRIYSKKVDYLFHDCNVVL 82
           +  ++KKS Y + DI STV HI+   VP++LR+S  LL GVVRIYSKKVD +  DCN + 
Sbjct: 3   MDEKIKKSKYHSVDIKSTVNHILKVSVPVSLRLSAILLFGVVRIYSKKVDNVLSDCNNIQ 62

Query: 83  TGLSKAFAAIQLTLPE------DARQAPVQSITLPENFNLDALNL 121
             L K +  I   LP+      D++ A   +ITLPENF LD L+L
Sbjct: 63  KRLLKVYPVI--ILPKNTMAMGDSKVAARNAITLPENFQLDELDL 105


>Medtr5g081270.1 | sister chromatid cohesion 1 protein | HC |
           chr5:34817605-34814956 | 20130731
          Length = 231

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 6/127 (4%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYS   LARK PL  +W+AA +  ++ +      +I    + I++P +P+ALR+SG L+
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATMHAKINRKKLNKLNIIKICEEILNPAIPMALRLSGILM 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQL----TLPEDARQAPVQSITLP--ENF 114
            GVV +Y +KV  L+ D + +L  +++A+    +     LP+   QA   +ITLP  E  
Sbjct: 61  GGVVIVYERKVKLLYDDVSRLLVEINEAWKVKSVPDHTLLPKGKSQAKRAAITLPGKEQM 120

Query: 115 NLDALNL 121
            L+ L L
Sbjct: 121 TLEELEL 127


>Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC |
           chr7:10945596-10952129 | 20130731
          Length = 773

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 10/141 (7%)

Query: 9   ARKGPLST---VWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGV-PIALRMSGHLLLGVV 64
           ++KG  S+   +W+AA    +LKK+    +DI S V  I+   +  ++ R+ G+LL GVV
Sbjct: 4   SKKGLCSSKNPLWVAAFFFKQLKKAQILDSDISSAVDQILHHEMDAVSYRLLGYLLSGVV 63

Query: 65  RIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQSITLPENFNLDALNLGDD 124
           +IYSK+V+YL  DCN VL G++K     +   P +  +    S  +PE F+LDA++LG  
Sbjct: 64  KIYSKQVEYLLDDCNKVLFGINKFVIKTKSNTPVEKLRM---SFIMPETFDLDAIDLGTP 120

Query: 125 IDHNWVEDVHRRSQEDITLED 145
            D       H    E ITL+D
Sbjct: 121 ED---TSRFHTALPEQITLKD 138


>Medtr5g083120.1 | sister chromatid cohesion 1 protein, putative |
           LC | chr5:35867520-35862679 | 20130731
          Length = 575

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 19  IAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLLLGVVRIYSKKVDYLFHDC 78
           +AA +  ++ +      +I    + I++P +P+ALR+SG L+ GVV +Y +KV  L+ D 
Sbjct: 1   MAATMHAKINRKKLNKLNIIKICEEILNPAIPMALRLSGILMGGVVIVYERKVKLLYDDV 60

Query: 79  NVVLTGLSKAFAAIQL----TLPEDARQAPVQSITLPENFNLDALNLGDDIDHNW 129
           + +L  +++A+          LP+   QA    IT+P   N +  ++ +DI +++
Sbjct: 61  SRLLVEINEAWKVKSAPDPTVLPKGKSQAKRNEITIP---NKERGSIEEDIGNSY 112