Miyakogusa Predicted Gene
- Lj3g3v0883690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0883690.1 Non Characterized Hit- tr|B8LMB6|B8LMB6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,31.63,4e-18,seg,NULL; RRM,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.41594.1
(240 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 306 8e-84
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 148 3e-36
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 148 3e-36
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 144 6e-35
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 143 1e-34
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 119 2e-27
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 119 2e-27
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 114 7e-26
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 111 7e-25
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 103 2e-22
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 80 2e-15
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 5e-15
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 75 7e-14
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 74 1e-13
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 72 4e-13
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 72 5e-13
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 6e-13
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 70 1e-12
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 1e-12
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 4e-12
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 4e-12
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 4e-12
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 4e-12
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 4e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 69 4e-12
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 68 7e-12
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 66 3e-11
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 66 3e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 65 4e-11
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 64 1e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 3e-10
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 6e-10
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 6e-10
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 61 1e-09
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 60 2e-09
Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 3e-09
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 3e-09
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 4e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 58 7e-09
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 7e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 8e-09
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-08
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 9e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 9e-08
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 2e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 2e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 4e-07
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 4e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 4e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 4e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 4e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 5e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 5e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 52 7e-07
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 7e-07
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 7e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 52 7e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 52 7e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 9e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 50 2e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 49 4e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 49 5e-06
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 49 5e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 49 6e-06
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 49 6e-06
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 48 7e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 7e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 7e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 7e-06
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 1e-05
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 306 bits (785), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/187 (82%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Query: 54 QAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVK 113
+ A S A R+LYVGNIPRT++NDEL IVQEH AVEKAEVMYDKYS RSRRFAFVT+K
Sbjct: 50 EQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMK 109
Query: 114 TVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAK 173
TVEDANAA EKLNGT+IGGREIKVN+TEKPLTT P VQA ES +VDSPYKVYVGNLAK
Sbjct: 110 TVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLP-VQAGESTFVDSPYKVYVGNLAK 168
Query: 174 TVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQ 233
VTSD LK FFSEKG LSAKVSR PGTSKSSGFGFVTFSSDEDVEAAISSFNNA LEGQ
Sbjct: 169 NVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQ 228
Query: 234 KIRVNKA 240
KIRVNKA
Sbjct: 229 KIRVNKA 235
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 4/188 (2%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
++A +TQS RRL+VGN+P +L++ +LA + E V E++YD + RSR FAFVT+
Sbjct: 100 QEAESTQS---RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTM 156
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLA 172
VEDA AI +GT +GGR IKVN E P+ + YVDSP+K+Y GNL
Sbjct: 157 GNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG-YVDSPHKIYAGNLG 215
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEG 232
+TS L+ F+++ +LSAKV KS G+GFV+F + EDVE A+S+ N ++G
Sbjct: 216 WDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQG 275
Query: 233 QKIRVNKA 240
+ +R+ A
Sbjct: 276 RPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 4/188 (2%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
++A +TQS RRL+VGN+P +L++ +LA + E V E++YD + RSR FAFVT+
Sbjct: 100 QEAESTQS---RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTM 156
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLA 172
VEDA AI +GT +GGR IKVN E P+ + YVDSP+K+Y GNL
Sbjct: 157 GNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG-YVDSPHKIYAGNLG 215
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEG 232
+TS L+ F+++ +LSAKV KS G+GFV+F + EDVE A+S+ N ++G
Sbjct: 216 WDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQG 275
Query: 233 QKIRVNKA 240
+ +R+ A
Sbjct: 276 RPLRLKLA 283
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
E+ T S+ RLYVGN+P ++T+ +LA+I E V E++YD+ + RSR FAFVT+
Sbjct: 98 EEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTM 157
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEY---VDSPYKVYVG 169
K+ E+A AI +G+Q+GGR KVN E P + Q + Y VDSP+K+Y G
Sbjct: 158 KSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAG 217
Query: 170 NLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAP 229
NL + S L++ F E+ +L AK+ +S GFGFVTF + E +EAA+++ N
Sbjct: 218 NLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVE 277
Query: 230 LEGQKIRVNKA 240
++G+ +R+N A
Sbjct: 278 VQGRPLRLNLA 288
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 119/185 (64%), Gaps = 11/185 (5%)
Query: 58 TQSEADRR--LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTV 115
T +E D R LY GN+P ++ + LA +++E+ + E EV+YD+ +G+SR FAFVT+ V
Sbjct: 105 TVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCV 164
Query: 116 EDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 175
ED NA I+ L+G + GR ++VN ++KP + +E Y ++ YK++VGNLA TV
Sbjct: 165 EDCNAVIQNLDGKEFMGRTLRVNFSDKP---------KPKEPLYPETEYKLFVGNLAWTV 215
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
TS+ L F E G V+ A+V T KS G+GFV++++ +++ A++ +N LEG+ +
Sbjct: 216 TSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTL 275
Query: 236 RVNKA 240
RV+ A
Sbjct: 276 RVSLA 280
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
E + +L+VGN+ T+T++ L QEH V A V++D +G+SR + FV+ T + +
Sbjct: 201 ETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDT 260
Query: 121 AIEKLNGTQIGGREIKVNVTE 141
A+ ++ ++ GR ++V++ +
Sbjct: 261 ALAIMDNVELEGRTLRVSLAQ 281
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 26/197 (13%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
++RL+VGN+P ++ + +LA I + VE EV+YDK +GRSR F FVT+ + + AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY------------------ 164
++LNG + GRE++VN P ++E S + ++P
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPP-------RSENSRFGENPRFGGDRPRGPPRGGSSDGD 195
Query: 165 -KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
+V+VGNLA V + L++ F E+G+VL AKV + +S GFGFVTFSS ++V++AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 224 SFNNAPLEGQKIRVNKA 240
+ + A L G+ IRV+ A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
S+ D R++VGN+ + N L ++ E V +A+V+YD+ SGRSR F FVT + ++ +
Sbjct: 192 SDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVD 251
Query: 120 AAIEKLNGTQIGGREIKVN 138
+AI L+G + GR I+V+
Sbjct: 252 SAIRTLDGADLNGRAIRVS 270
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 26/197 (13%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
++RL+VGN+P ++ + +LA I + VE EV+YDK +GRSR F FVT+ + + AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY------------------ 164
++LNG + GRE++VN P ++E S + ++P
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPP-------RSENSRFGENPRFGGDRPRGPPRGGSSDGD 195
Query: 165 -KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
+V+VGNLA V + L++ F E+G+VL AKV + +S GFGFVTFSS ++V++AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 224 SFNNAPLEGQKIRVNKA 240
+ + A L G+ IRV+ A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
S+ D R++VGN+ + N L ++ E V +A+V+YD+ SGRSR F FVT + ++ +
Sbjct: 192 SDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVD 251
Query: 120 AAIEKLNGTQIGGREIKVN 138
+AI L+G + GR I+V+
Sbjct: 252 SAIRTLDGADLNGRAIRVS 270
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 11/182 (6%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN P + +++LA + + VE AEV+Y++ + SR F FVT+ TVE+A +A+
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV 167
Query: 123 EKLNGTQIGGREIKVNVT----EKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
EK NG GR + VN +P T P + ++YV NLA V +
Sbjct: 168 EKFNGYDYNGRSLVVNKASPKGSRPERTERAP-------RTFEPVLRIYVANLAWEVDNS 220
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
L+ FSE GK++SA+V T +S GFGFVT S + ++ AI++ + LEG+ IRV+
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Query: 239 KA 240
A
Sbjct: 281 VA 282
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R+YV N+ + N L + EH + A V+YD+ +GRSR F FVT+ + N AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 125 LNGTQIGGREIKVNVTE 141
L+G + GR I+V+V E
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 6/178 (3%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +++VGN+P + +++LA + ++ VE AEV+Y++ + RSR F FVT+ T E+ A+
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAV 180
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
K +G ++ GR + VN P T P ++ + +S + YVGNL V + L+
Sbjct: 181 NKFSGFELDGRLLTVN-KAAPRGT---PRLR--QPRTFNSGLRAYVGNLPWDVDNSSLEQ 234
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FSE GKV SA+V T +S GFGFVT S++ ++ AI++ + G+ IRVN A
Sbjct: 235 LFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R YVGN+P + N L + EH VE A+V+YD+ +GRSR F FVT+ + N AI
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 125 LNGTQIGGREIKVNVTEK 142
L+G GR I+VNV E+
Sbjct: 277 LDGQSFNGRAIRVNVAEE 294
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN P + +++LA + + VE AEV+Y++ + SR F FVT+ TVE+A +A+
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV 167
Query: 123 EKLNGTQIGGREIKVNVT----EKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
EK NG GR + VN +P T P + ++YV NLA V +
Sbjct: 168 EKFNGYDYNGRSLVVNKASPKGSRPERTERAP-------RTFEPVLRIYVANLAWEVDNS 220
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQ 233
L+ FSE GK++SA+V T +S GFGFVT S + ++ AI A L+GQ
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAI-----AALDGQ 270
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 156 ESEYVDSP--YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFS 213
E +V+ P K++VGN V S+ L F + G V A+V T S GFGFVT S
Sbjct: 99 EGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMS 158
Query: 214 SDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ E+ E+A+ FN G+ + VNKA
Sbjct: 159 TVEEAESAVEKFNGYDYNGRSLVVNKA 185
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 25/195 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
++VG++ +T+ L +++ A VM+D+ +GRSR F FV+ + ++A +AI
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 125 LNGTQIGGREIKVNVTEKPL------------TTVDFPLVQAEESEYV---DSPYK---- 165
L G +G R+I+ N K + V+ +EE++ + DSP K
Sbjct: 192 LTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQY 251
Query: 166 --VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
VYVGNLA VTS L + F G V + + RV + GFGFV +S+ + AI
Sbjct: 252 TTVYVGNLAPEVTSVDLHHHFHALG-VGTIEDVRV---QRDKGFGFVRYSTHGEAALAIQ 307
Query: 224 SFNNAPLEGQKIRVN 238
N L G+ I+ +
Sbjct: 308 MGNTRFLFGKPIKCS 322
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
S R +YVGNI ++ L + A+E +++ + S + FV A
Sbjct: 42 SSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAA 97
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDM 179
AI LNG I G+ IKVN + E + ++VG+L+ VT
Sbjct: 98 IAIVTLNGRNIFGQSIKVNWA-----------YTRGQREDTSGHFHIFVGDLSPEVTDAT 146
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 239
L FS A+V T +S GFGFV+F + ++ ++AI+ L ++IR N
Sbjct: 147 LYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNW 206
Query: 240 A 240
A
Sbjct: 207 A 207
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
++++G + + T +E + + + + +M D+++GR R F F+T + I++
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 125 ---LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
+N Q+ EIK + + T DF K++VG + TV+ D LK
Sbjct: 79 NHIINDKQV---EIKRTIPKGASQTNDFKTK------------KIFVGGIPATVSEDELK 123
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FFS+ G V+ ++ R T +S GFGFV F SD+ V+ ++ N ++ ++ + KA
Sbjct: 124 IFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKA 182
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ + T D+L N + + A +M D GRS+ F FV + EDA A+E L
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDA-DGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 126 NGTQIGGREIKVNVTEKPL---TTVDFPLVQAEESEYVD--SPYKVYVGNLAKTVTSDML 180
NG ++ +E V +K + Q + VD +Y+ NL ++T + L
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
K FSE G + S K+ R P S G GFV FS+ E+ A+ N
Sbjct: 332 KEMFSEFGTITSYKIMRDP-NGVSRGSGFVAFSTPEEASRALGEMN 376
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ +T+ + L + + ++ D SG+S+ + FV + + A AI+KL
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG I +++ V ++ ++ + V S K VYV NL+++ T D LKN
Sbjct: 181 NGMLINDKQVFVGH-----------FLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKN 229
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F G + SA + R +S FGFV F + ED A+ + N ++ ++ V KA
Sbjct: 230 EFGAYGTITSAVLMR-DADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKA 286
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YVG+L V L + F++ G+V+S +V R T +S G+G+V F++ +D A+
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 226 NNAPLEGQKIRV 237
N P+ + IRV
Sbjct: 94 NFTPMNNKSIRV 105
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 59 QSEADR----RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKT 114
+S DR ++V N+ + T+DEL E + A VM D G+S+ F FV ++
Sbjct: 204 ESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFES 262
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEES--EYVDSPYK---VYVG 169
+DA A+E LNG +I +E V +K ++ E+S E D Y+ +YV
Sbjct: 263 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADK-YQGANLYVK 321
Query: 170 NLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
NL ++ + LK FS G + S KV R P S G GFV FS+ E+ A+ N
Sbjct: 322 NLDDSIADEKLKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLEMN 377
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ + + + L + + +V D SG+S+ + FV T E A AIEKL
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG + +++ V P ++ +E E K V+V NL+++ T D LK
Sbjct: 183 NGMLLNDKQVYVG-----------PFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKK 231
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F E G + SA V R G KS FGFV F S +D A+ + N ++ ++ V KA
Sbjct: 232 TFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKA 288
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YVG+L VT L + F++ G+V+S +V R T +S G+G+V +S+ +D A+
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 226 NNAPLEGQKIRV 237
N PL + IR+
Sbjct: 96 NFTPLNNRPIRI 107
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV-------KTVED 117
++++G + R T + ++ + + +M D+ +G+ R F F+T K +ED
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
++ +N Q+ EIK + + + DF K++VG + VT
Sbjct: 106 SHI----INSKQV---EIKRTIPRGAVGSKDFRTK------------KIFVGGIPSNVTE 146
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
D ++FF+ G+V ++ R T++S GFGFVTF ++E V+ +S N G ++ +
Sbjct: 147 DEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEI 206
Query: 238 NKA 240
KA
Sbjct: 207 KKA 209
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
++++VG IP +T DE + + V+ ++M D + RSR F FVT T E + +
Sbjct: 133 KKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLS 192
Query: 124 KLNGTQIGGREIKVNVTE 141
N + G ++++ E
Sbjct: 193 MGNKIEFAGTQVEIKKAE 210
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 11/170 (6%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++V N+ ++ N L ++ ++ + ++V+ + G+S+ + FV +T E ANAAIE+L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIERL 158
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
NG +G ++I V K + ++ Y + +Y+ NL ++ +L+ FS
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRIS----SGPDTRYTN----LYMKNLDLDISETLLREKFS 210
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
GK++S V++ S GFGFV F + ED + A+ + N L G KI
Sbjct: 211 SFGKIISLAVAK-DSNGMSKGFGFVNFDNPEDAKRAMETMNGLQL-GSKI 258
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 101 SGRSRRFAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEES--- 157
+G S+ F FV EDA A+E +NG Q+G + + V +K Q EE
Sbjct: 225 NGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKE 284
Query: 158 ---EYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSR-VPGTSKSSGFGFVTFS 213
+Y S +YV N+ V+ + L++ FS G + SAK+ R G SK GFGFV FS
Sbjct: 285 QVLKYKGS--NIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISK--GFGFVCFS 340
Query: 214 SDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ E+ A++SF+ G+ + V+ A
Sbjct: 341 TPEEANKAVNSFHGFMFHGKPLYVSLA 367
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ L++ +L + + + + D SG+S + +V + DA AIE
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + + G+ I+V + + + V+V NLA+++ + L++ F
Sbjct: 72 NHSTLNGKAIRVMWSRR------------DPDARKSCIGNVFVKNLAESIDNSGLEDMFK 119
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 239
+ G +LS+KV + KS G+GFV F ++E AAI N + ++I V K
Sbjct: 120 KFGNILSSKVV-MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGK 172
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYV N+ +T L + + D+ +G+S+ F FV + +DA A+E +
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 126 NGTQIGGREIKVNVTEKPL--TTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
+G+Q G + + V +K + + L + +++ S +YV N+ +V + L++
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGS--NIYVKNIDTSVGDEELRDH 312
Query: 184 FSEKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS G+VLSAKV R GTSK GFGFV FS+ + ++S FN G+ + V+ A
Sbjct: 313 FSACGEVLSAKVMRDDKGTSK--GFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFA 368
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ +T+ +L E + A V D +G+S + +V + + ++A AIE
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + + G+ I+V + A +S V+V NLA ++ + L + F
Sbjct: 77 NHSSLNGKVIRVMWLSRD--------ADARKS----GKGNVFVKNLAASIDNVGLHDLFQ 124
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 239
+ G +LS+K++R KS GFG++ F S+E AI N + + ++I V K
Sbjct: 125 KYGNILSSKIARSE-DGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGK 177
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D YVGN+ ++ + L + + V V D+ + + + + FV ++ EDA+ AI
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
+ LN ++ G+ I+VN +++ + +D +++GNL V +L +
Sbjct: 84 KVLNMIKLYGKPIRVNKA-------------SQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
Query: 183 FFSEKGKVLS-AKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS G +++ K+ R P T S GFGF+++ S E ++AI + N L ++I V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ ++T+D+L N E+ + A VM D G+S+ F FV + + A A+E L
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVEAL 263
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEES---EYVDSPY--KVYVGNLAKTVTSDML 180
NG + +E V K + L + E E VD Y +Y+ NL +VT + L
Sbjct: 264 NGKKFDDKEWYVGKALKKYER-ELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKL 322
Query: 181 KNFFSEKGKVLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 239
FSE G V S K+ R P G S+ SGF V FS+ E+ A++ N + G+ + V
Sbjct: 323 SELFSEFGTVTSCKILRDPQGISRGSGF--VAFSTPEEATRALAEMNGKMVAGKPLYVAP 380
Query: 240 A 240
A
Sbjct: 381 A 381
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ R + + L + + ++ D SG S+ + FV + E A +AI+KL
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-VYVGNLAKTVTSDMLKNFF 184
NG + +KP+ F Q ++ ++ + VYV NL+++VT D LKN F
Sbjct: 173 NGMLL---------NDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTF 223
Query: 185 SEKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
E G + SA V R V G SK FGFV F + + A+ + N + ++ V KA
Sbjct: 224 GEYGTITSAVVMRDVDGKSKC--FGFVNFENADAAAEAVEALNGKKFDDKEWYVGKA 278
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YVG+L VT L + F++ G+V+S ++ R + +S G+G+V FS+ D A+
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 226 NNAPLEGQKIRV 237
N PL + IR+
Sbjct: 86 NFTPLNNKPIRI 97
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
+ L V N+P +L+ ++ ++ + V E++ K G+ + + FVT+ + E A AA++
Sbjct: 96 KNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVD 154
Query: 124 KLNGTQIGGREIKVNVTEK-PLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
K N T+I GR ++V + P +E+ YV +Y NLA S L++
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYV-----IYASNLAWKARSTHLRD 209
Query: 183 FFSEKGKV-LSAKVS-RVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
F+E K +SA+V +VPG KS+G+GFV++ ++E+ EAAIS+ L G+ + V
Sbjct: 210 IFTENFKTPVSARVVFQVPG-GKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLV 265
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + A VM+D +GRS+ + FV+ + +DA +AI +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 126 NGTQIGGREI----------------KVNVTEKPLTTVDFPLVQAEESEYVDSP------ 163
G +G R+I K+N ++ + + +++ D+P
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
VYVGNL VT L F G + +V RV GFGFV +++ E+ AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEV-RV---QSGKGFGFVRYNTHEEAAMAIQ 322
Query: 224 SFNNAPLEGQKIRVN 238
N P+ G+ ++ +
Sbjct: 323 MANGRPVRGKTMKCS 337
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
+ A R +YVGNI +T+ LA + Q + +++ + S + FV A
Sbjct: 56 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAA 111
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEES-EYVDSPYKVYVGNLAKTVTSD 178
AI L+G Q+ G+ +KVN A S E + V+VG+L+ VT
Sbjct: 112 LAIMTLHGRQLYGQALKVN------------WAYANSSREDTSGHFNVFVGDLSPEVTDA 159
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
L FS A+V T +S G+GFV+F +D ++AI+ L ++IR N
Sbjct: 160 TLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCN 219
Query: 239 KA 240
A
Sbjct: 220 WA 221
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + A VM+D +GRS+ + FV+ + +DA +AI +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 126 NGTQIGGREI----------------KVNVTEKPLTTVDFPLVQAEESEYVDSP------ 163
G +G R+I K+N ++ + + +++ D+P
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
VYVGNL VT L F G + +V RV GFGFV +++ E+ AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEV-RV---QSGKGFGFVRYNTHEEAAMAIQ 322
Query: 224 SFNNAPLEGQKIRVN 238
N P+ G+ ++ +
Sbjct: 323 MANGRPVRGKTMKCS 337
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
+ A R +YVGNI +T+ LA + Q + +++ + S + FV A
Sbjct: 56 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAA 111
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEES-EYVDSPYKVYVGNLAKTVTSD 178
AI L+G Q+ G+ +KVN A S E + V+VG+L+ VT
Sbjct: 112 LAIMTLHGRQLYGQALKVN------------WAYANSSREDTSGHFNVFVGDLSPEVTDA 159
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
L FS A+V T +S G+GFV+F +D ++AI+ L ++IR N
Sbjct: 160 TLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCN 219
Query: 239 KA 240
A
Sbjct: 220 WA 221
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + A VM+D +GRS+ + FV+ + +DA +AI +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 126 NGTQIGGREI----------------KVNVTEKPLTTVDFPLVQAEESEYVDSP------ 163
G +G R+I K+N ++ + + +++ D+P
Sbjct: 191 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 250
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
VYVGNL VT L F G + +V RV GFGFV +++ E+ AI
Sbjct: 251 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEV-RV---QSGKGFGFVRYNTHEEAAMAIQ 306
Query: 224 SFNNAPLEGQKIRVN 238
N P+ G+ ++ +
Sbjct: 307 MANGRPVRGKTMKCS 321
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
+ A R +YVGNI +T+ LA + Q + +++ + S + FV A
Sbjct: 40 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAA 95
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEES-EYVDSPYKVYVGNLAKTVTSD 178
AI L+G Q+ G+ +KVN A S E + V+VG+L+ VT
Sbjct: 96 LAIMTLHGRQLYGQALKVN------------WAYANSSREDTSGHFNVFVGDLSPEVTDA 143
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
L FS A+V T +S G+GFV+F +D ++AI+ L ++IR N
Sbjct: 144 TLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCN 203
Query: 239 KA 240
A
Sbjct: 204 WA 205
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 53 EQAAATQSEADR----RLYVGNIPRTLTNDELANIVQEHAAVEKAEV-MYDKYSGRSRRF 107
EQ TQ + + RL N+P + T +++ ++ +++ V E+ MY+K R+R
Sbjct: 74 EQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGL 131
Query: 108 AFVTVKTVEDANAAIEKLNGTQIGGREIKVN------------VTEKPLTTVDFPLVQAE 155
AFV + + E+A+ A+ L + GR I + V KP+T
Sbjct: 132 AFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPIT---------- 181
Query: 156 ESEYVDSPYKVYVGNLAKTVTSDMLKNFF-SEKGKVLSAKVSRVPGTSKSSGFGFVTFSS 214
Y ++V N S +K FF S GKV+SA+V + SG+GFV++ S
Sbjct: 182 --------YNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKS 233
Query: 215 DEDVEAAISSFNNAPLEGQKIRV 237
++ + A++ F G+ +RV
Sbjct: 234 KKEADEALAEFQGKNFMGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 53 EQAAATQSEADR----RLYVGNIPRTLTNDELANIVQEHAAVEKAEV-MYDKYSGRSRRF 107
EQ TQ + + RL N+P + T +++ ++ +++ V E+ MY+K R+R
Sbjct: 74 EQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGL 131
Query: 108 AFVTVKTVEDANAAIEKLNGTQIGGREIKVN------------VTEKPLTTVDFPLVQAE 155
AFV + + E+A+ A+ L + GR I + V KP+T
Sbjct: 132 AFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPIT---------- 181
Query: 156 ESEYVDSPYKVYVGNLAKTVTSDMLKNFF-SEKGKVLSAKVSRVPGTSKSSGFGFVTFSS 214
Y ++V N S +K FF S GKV+SA+V + SG+GFV++ S
Sbjct: 182 --------YNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKS 233
Query: 215 DEDVEAAISSFNNAPLEGQKIRV 237
++ + A++ F G+ +RV
Sbjct: 234 KKEADEALAEFQGKNFMGRPLRV 256
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ T T+++L + + + A +M D+ +G S+ F FV ++ + A AA+EKL
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDE-NGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 126 NGTQIG-GREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDM 179
NGT G+ + V ++ + L E E + K +Y+ NL +++ +
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCER-EAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEK 224
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
LK FSE G + S KV S GFGFV FS+ E+ AI+ + + GQK
Sbjct: 225 LKEMFSEFGTITSCKV-MFDAHGHSKGFGFVAFSTSEEASKAINGM-SGKIIGQK 277
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++V N+ ++ N L + V +V D +G+S + FV E A AIEKL
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-KVYVGNLAKTVTSDMLKNFF 184
+G I ++ V + + + E SE + VYV NL +T T + LK F
Sbjct: 76 DGMLIKDKK----------AFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLF 125
Query: 185 SEKGKVLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFN 226
S G + SA + + G SK FGFV F S + AA+ N
Sbjct: 126 STYGVITSAVIMKDENGNSKC--FGFVNFQSPDSAAAAVEKLN 166
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R +YVGN+ +T L + VE ++ + S + F+ A AI
Sbjct: 62 RSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKS----SYGFIHYFDRRSAALAIL 117
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
LNG + G+ IKVN + + E Y ++VG+L+ VT L
Sbjct: 118 TLNGRHLFGQPIKVNWA-----------YASGQREDTSGHYNIFVGDLSPEVTDATLFAC 166
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS A+V T +S GFGFV+F S +D ++AI+ L ++IR N A
Sbjct: 167 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 223
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + + A VM+D+ +GRSR F FV+ ++ +DA +AI L
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 126 NGTQIGGREIKVNVTEKPL------------TTVDFPLVQAEESEYV---DSP------Y 164
G +G R+I+ N K + V+ +E+ + + D P
Sbjct: 209 TGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYT 268
Query: 165 KVYVGNLAKTVTS-DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
VYVGNL T D+ ++F + L A V + GFGFV +S+ + AI
Sbjct: 269 TVYVGNLGSEATQLDLHRHFHA-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 323
Query: 224 SFN 226
N
Sbjct: 324 MGN 326
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
E+A S +YV NI T+++L + + A VM D +G+SR F FV
Sbjct: 198 ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNF 256
Query: 113 KTVEDANAAIEKLNGTQIG-------GREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK 165
++ + A AA+EKLNGT I GR + E L F + E +
Sbjct: 257 QSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENEL-KAKFEQERISRYEKLQG-AN 314
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+Y+ NL + LK+ FSE G V S +V + S G GFV FS+ E+ A++
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRV-MLDSHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 226 N 226
N
Sbjct: 374 N 374
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A+ LYVG++ ++ +L ++ + A V V D+ S +A+V +DA A
Sbjct: 28 ANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANA 87
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
E LN T + + I++ +++ P V+ S V++ NL ++ L
Sbjct: 88 KELLNFTPLNEKPIRIMFSQRD------PSVRKSGSG------NVFIKNLDTSIDHKALH 135
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ F+ G VLS KV+ + G +S G+GFV F ++E ++AI + + +++ V
Sbjct: 136 DTFAAFGPVLSCKVA-LDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ + L + V +V D +G+S+ + FV E A +AI++L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP--YKVYVGNLAKTVTSDMLKNF 183
+G I +++ V F + E + SP VYV N+++ T + LK
Sbjct: 179 DGMLINDKQVYVG----------FFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQL 228
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
F G + SA V + KS FGFV F S + AA+ N + K+
Sbjct: 229 FGPFGMITSATVMK-DANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKV 279
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
E+A S +YV NI T+++L + + A VM D +G+SR F FV
Sbjct: 198 ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNF 256
Query: 113 KTVEDANAAIEKLNGTQIG-------GREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK 165
++ + A AA+EKLNGT I GR + E L F + E +
Sbjct: 257 QSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENEL-KAKFEQERISRYEKLQG-AN 314
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+Y+ NL + LK+ FSE G V S +V + S G GFV FS+ E+ A++
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRV-MLDSHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 226 N 226
N
Sbjct: 374 N 374
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A+ LYVG++ ++ +L ++ + A V V D+ S +A+V +DA A
Sbjct: 28 ANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANA 87
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
E LN T + + I++ +++ P V+ S V++ NL ++ L
Sbjct: 88 KELLNFTPLNEKPIRIMFSQRD------PSVRKSGSG------NVFIKNLDTSIDHKALH 135
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ F+ G VLS KV+ + G +S G+GFV F ++E ++AI + + +++ V
Sbjct: 136 DTFAAFGPVLSCKVA-LDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ + L + V +V D +G+S+ + FV E A +AI++L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP--YKVYVGNLAKTVTSDMLKNF 183
+G I +++ V F + E + SP VYV N+++ T + LK
Sbjct: 179 DGMLINDKQVYVG----------FFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQL 228
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
F G + SA V + KS FGFV F S + AA+ N + K+
Sbjct: 229 FGPFGMITSATVMK-DANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKV 279
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + V +++ +K +G+ + F+ + A ++
Sbjct: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
NGTQ+ G E L F + E + ++VG+LA VT +L+
Sbjct: 75 TYNGTQMPGTEQTFR-----LNWASFGI--GERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
Query: 184 F-SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F + G V AKV P T +S G+GFV FS + + A+S N + +R++ A
Sbjct: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEH-AAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + H +V A+V+ D +GRS+ + FV + N A
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTT------------------VDFPL-------VQAEE 156
+ ++NG R ++++ TT +P+ V
Sbjct: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVP 226
Query: 157 SEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDE 216
EY + +YVGNL V+ + LK F + G+++S KV PG + GFV F +
Sbjct: 227 PEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVH--PGKA----CGFVQFGARA 280
Query: 217 DVEAAISSFNNAPLEGQKIRVN 238
E AI L Q IRV+
Sbjct: 281 SAEEAIQKMQGKILGQQVIRVS 302
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 63 DRRLYVGNIPRTLTNDELA-NIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + +V+ A+V+YD +GRS+ + FV + + A
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQA----EESEYVDSPYKVYVGNLAKTVTS 177
+ ++NG R +++ ++ P Q+ +SE + ++VG L VT
Sbjct: 249 MTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTD 308
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ LK FS+ G++ S K+ G GFV F++ + E A+ N + Q +R+
Sbjct: 309 EDLKQTFSQYGEIASVKI------PVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRL 362
Query: 238 N 238
+
Sbjct: 363 S 363
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I D L Q V +A +M D+ +GR+R F FV A + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-------KVYVGNLAKTVTS 177
+ I GR ++ +K + D + S SP K++VG LA TVT
Sbjct: 65 KH--VIDGRTVEA---KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTE 119
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLEGQKIR 236
KN+F + G + V T + GFGF+T+ S+E VE + +F+ L G+ +
Sbjct: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVE 177
Query: 237 VNKA 240
V +A
Sbjct: 178 VKRA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I D L Q V +A +M D+ +GR+R F FV A + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-------KVYVGNLAKTVTS 177
+ I GR ++ +K + D + S SP K++VG LA TVT
Sbjct: 65 KH--VIDGRTVEA---KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTE 119
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLEGQKIR 236
KN+F + G + V T + GFGF+T+ S+E VE + +F+ L G+ +
Sbjct: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVE 177
Query: 237 VNKA 240
V +A
Sbjct: 178 VKRA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I D L Q V +A +M D+ +GR+R F FV A + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-------KVYVGNLAKTVTS 177
+ I GR ++ +K + D + S SP K++VG LA TVT
Sbjct: 65 KH--VIDGRTVEA---KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTE 119
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLEGQKIR 236
KN+F + G + V T + GFGF+T+ S+E VE + +F+ L G+ +
Sbjct: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVE 177
Query: 237 VNKA 240
V +A
Sbjct: 178 VKRA 181
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L V IP + + L + ++ +E VM ++ +GRSR F +VT +V+DA E
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---E 60
Query: 124 KLNGTQI-GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTSD 178
L+G + G R ++V V A E + +P K ++V + +VT +
Sbjct: 61 VLSGEHVLGDRMLEVKV--------------ATPKEEMRAPAKKVTRIFVARIPPSVTEE 106
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
++ F + G + + + G+ G GF+TF + E VE +S + L G + V+
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE--LGGSAVVVD 164
Query: 239 KA 240
+A
Sbjct: 165 RA 166
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L V IP + + L + ++ +E VM ++ +GRSR F +VT +V+DA E
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---E 60
Query: 124 KLNGTQI-GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTSD 178
L+G + G R ++V V A E + +P K ++V + +VT +
Sbjct: 61 VLSGEHVLGDRMLEVKV--------------ATPKEEMRAPAKKVTRIFVARIPPSVTEE 106
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
++ F + G + + + G+ G GF+TF + E VE +S + L G + V+
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE--LGGSAVVVD 164
Query: 239 KA 240
+A
Sbjct: 165 RA 166
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L V IP + + L + ++ +E VM ++ +GRSR F +VT +V+DA E
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---E 60
Query: 124 KLNGTQI-GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTSD 178
L+G + G R ++V V A E + +P K ++V + +VT +
Sbjct: 61 VLSGEHVLGDRMLEVKV--------------ATPKEEMRAPAKKVTRIFVARIPPSVTEE 106
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
++ F + G + + + G+ G GF+TF + E VE +S + L G + V+
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE--LGGSAVVVD 164
Query: 239 KA 240
+A
Sbjct: 165 RA 166
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L V IP + + L + ++ +E VM ++ +GRSR F +VT +V+DA E
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---E 60
Query: 124 KLNGTQI-GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTSD 178
L+G + G R ++V V A E + +P K ++V + +VT +
Sbjct: 61 VLSGEHVLGDRMLEVKV--------------ATPKEEMRAPAKKVTRIFVARIPPSVTEE 106
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
++ F + G + + + G+ G GF+TF + E VE +S + L G + V+
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE--LGGSAVVVD 164
Query: 239 KA 240
+A
Sbjct: 165 RA 166
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA S+ L+ FS+ G+++ +K+ T +S GFGFVTF+ ++ +
Sbjct: 5 DVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRD 64
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI N ++G+ I VN+A
Sbjct: 65 AIEGMNGQDMDGRNITVNEA 84
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R +VG + ++ L ++ + ++++ D+ +GRSR F FVT + AIE
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 125 LNGTQIGGREIKVN 138
+NG + GR I VN
Sbjct: 69 MNGQDMDGRNITVN 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA ++ L+ FS+ G+++ +K+ T +S GFGFVTF++++ +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI + N L+G+ I VN+A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
++ + R +VG + N+ L ++ + ++++ D+ +GRSR F FVT + N
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 120 AAIEKLNGTQIGGREIKVN 138
AIE +NG + GR I VN
Sbjct: 62 DAIEAMNGQDLDGRNITVN 80
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA ++ L+ FS+ G+++ +K+ T +S GFGFVTF++++ +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI + N L+G+ I VN+A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R +VG + N+ L ++ + ++++ D+ +GRSR F FVT + N AIE
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 125 LNGTQIGGREIKVN 138
+NG + GR I VN
Sbjct: 67 MNGQDLDGRNITVN 80
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L++ +IP+ + ELAN Q V A+V DK +G S+ F FV+ + E A +AI +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 126 NGTQIGGREIKV 137
NG Q+GG+++KV
Sbjct: 410 NGCQLGGKKLKV 421
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
+ +E +L+VG +P+ +T DEL + +E A V++ ++ DK + SR FV + ++
Sbjct: 10 SNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDE 69
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPL-VQAEESEYVDSPYKVYVGNLAKTVT 176
A+ A+ + +K L PL V+ + E +K+++G L K ++
Sbjct: 70 ADKAVNACH-------------NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNIS 116
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
+ FS+ G + ++ R G+ ++S G F+ + + E AA+ + N
Sbjct: 117 EVEVSALFSKYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAIN 165
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L++ +IP+ + ELAN Q V A+V DK +G S+ F FV+ + E A +AI +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 126 NGTQIGGREIKV 137
NG Q+GG+++KV
Sbjct: 411 NGCQLGGKKLKV 422
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
+ +E +L+VG +P+ +T DEL + +E A V++ ++ DK + SR FV + ++
Sbjct: 10 SNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDE 69
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPL-VQAEESEYVDSPYKVYVGNLAKTVT 176
A+ A+ + +K L PL V+ + E +K+++G L K ++
Sbjct: 70 ADKAVNACH-------------NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNIS 116
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
+ FS+ G + ++ R + G F+ + + E AA+ + N
Sbjct: 117 EVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAIN 166
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG++PRT T +++ + +EH V + ++ D+ +G+ + F+ T E+A+ AI
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 125 LNG--TQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
L+ T GG + + E YK++VG+L K + ++
Sbjct: 149 LHNRHTLPGG-----------VGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEE 197
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
FS+ G++ + R +S G GFV +S + AAI++ N
Sbjct: 198 VFSKYGRIEDVYLMR-DDQKQSRGCGFVKYSHRDMALAAINALN 240
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKTVED 117
SE RL++GNIP+T T DE V+ VE +++ D + R+R FAFV
Sbjct: 180 SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 118 ANAAIEKLN--GTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 175
A+ + +K++ G ++ G +T P T P ++S +YV N+ + V
Sbjct: 240 ADFSRQKMSSVGFKLDG------IT--PTVTWADPKTSPDQSAAASQVKALYVKNIPENV 291
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSG---FGFVTFSSDEDVEAAISSFNNAPLEG 232
T++ LK F G+V KV PG K+SG FGF+ ++ A+ ++G
Sbjct: 292 TTEQLKELFRRHGEV--TKVVMPPG--KASGKRDFGFIHYAERSSALKAVKETEKYEIDG 347
Query: 233 QKIRV 237
Q + V
Sbjct: 348 QALEV 352
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR ++D++ + + + + +++ D+ +G S+ +AFV KT E A AI+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ ++ ++E + +++++GN+ KT T D +
Sbjct: 166 HNKEFKGKTLRCLLSE--------------------TKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
G V S + + P S++ GF FV +
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKTVED 117
SE RL++GNIP+T T DE V+ VE +++ D + R+R FAFV
Sbjct: 180 SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 118 ANAAIEKLN--GTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 175
A+ + +K++ G ++ G +T P T P ++S +YV N+ + V
Sbjct: 240 ADFSRQKMSSVGFKLDG------IT--PTVTWADPKTSPDQSAAASQVKALYVKNIPENV 291
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSG---FGFVTFSSDEDVEAAISSFNNAPLEG 232
T++ LK F G+V KV PG K+SG FGF+ ++ A+ ++G
Sbjct: 292 TTEQLKELFRRHGEV--TKVVMPPG--KASGKRDFGFIHYAERSSALKAVKETEKYEIDG 347
Query: 233 QKIRV 237
Q + V
Sbjct: 348 QALEV 352
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR ++D++ + + + + +++ D+ +G S+ +AFV KT E A AI+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ ++ ++E + +++++GN+ KT T D +
Sbjct: 166 HNKEFKGKTLRCLLSE--------------------TKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
G V S + + P S++ GF FV +
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKTVED 117
SE RL++GNIP+T T DE V+ VE +++ D + R+R FAFV
Sbjct: 180 SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 118 ANAAIEKLN--GTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 175
A+ + +K++ G ++ G +T P T P ++S +YV N+ + V
Sbjct: 240 ADFSRQKMSSVGFKLDG------IT--PTVTWADPKTSPDQSAAASQVKALYVKNIPENV 291
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSG---FGFVTFSSDEDVEAAISSFNNAPLEG 232
T++ LK F G+V KV PG K+SG FGF+ ++ A+ ++G
Sbjct: 292 TTEQLKELFRRHGEV--TKVVMPPG--KASGKRDFGFIHYAERSSALKAVKETEKYEIDG 347
Query: 233 QKIRV 237
Q + V
Sbjct: 348 QALEV 352
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR ++D++ + + + + +++ D+ +G S+ +AFV KT E A AI+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ ++ ++E + +++++GN+ KT T D +
Sbjct: 166 HNKEFKGKTLRCLLSE--------------------TKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
G V S + + P S++ GF FV +
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
+ +E +L+VG +P+ +T DEL + +E A V++ ++ DK + SR FV + ++
Sbjct: 10 SNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDE 69
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPL-VQAEESEYVDSPYKVYVGNLAKTVT 176
A+ A+ + +K L PL V+ + E +K+++G L K ++
Sbjct: 70 ADKAVNACH-------------NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNIS 116
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
+ FS+ G + ++ R G+ ++S G F+ + + E AA+ + N
Sbjct: 117 EVEVSALFSKYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAIN 165
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
S + +L+VG I L++ ++ V A ++ D+ SGRS+ F FVT TVE+A
Sbjct: 39 SSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEA 98
Query: 119 NAAIEKLNGTQIGGREIKVN-VTEKPLTTVD 148
++AI+ L+G + GR + VN E+P D
Sbjct: 99 SSAIQALDGQDLYGRRVGVNFANERPRDGFD 129
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
S + +L+VG I L++ ++ V A ++ D+ SGRS+ F FVT TVE+A
Sbjct: 39 SSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEA 98
Query: 119 NAAIEKLNGTQIGGREIKVN-VTEKPLTTVD 148
++AI+ L+G + GR + VN E+P D
Sbjct: 99 SSAIQALDGQDLYGRRVGVNFANERPRDGFD 129
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVM-YDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+YV N+ + T ++L + + +M YD +G S+ F FV ++ + A A+EK
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYD--NGNSKCFGFVNFQSSDSAATAVEK 259
Query: 125 LNGTQIG-------GREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
LNG+ GR K + E L F + + E +Y+ N+ K++
Sbjct: 260 LNGSTTNDGKVLFVGRAQKKSEREAELKAF-FEQEKLKRYEKFQGA-NLYLKNIDKSLNE 317
Query: 178 DMLKNFFSEKGKVLSAKV-SRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+ LK FSE G + S KV S G SK G GFV F++ E+ AI N + GQK
Sbjct: 318 EKLKELFSEFGTITSCKVMSDARGRSK--GVGFVAFTTPEEASKAIDEM-NGKIIGQK 372
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YVG+L V L + FS+ V+S +V R T S G+G+V +S+ D A+ +
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 226 NNAPLEGQKIRV 237
N PL G+ IR+
Sbjct: 87 NYVPLNGKPIRI 98
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LY+ NI ++L ++L + E + +VM D GRS+ FV T E+A+ AI+++
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKAIDEM 364
Query: 126 NGTQIGGREIKVNVTEK 142
NG IG + + V+V ++
Sbjct: 365 NGKIIGQKPVYVSVAQR 381
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L++ N+ ++ N L V +V D +G S+ FV + A AIEKL
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP--YKVYVGNLAKTVTSDMLKNF 183
+G + +++ V V+ +E SP VYV NL+++ T + LK
Sbjct: 174 DGMLMNDKKVYVGY-----------FVRCQER---SSPKFTNVYVKNLSESYTYEDLKQL 219
Query: 184 FSEKGKVLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
F+ G + S + + G SK FGFV F S + A+ N +
Sbjct: 220 FNSFGVITSVLIMKYDNGNSKC--FGFVNFQSSDSAATAVEKLNGS 263
>Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr4:43219118-43218715 | 20130731
Length = 104
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 107 FAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKV 166
F VT+ TVE+ A++K NG ++ G + V+ + T D P + DSP+ V
Sbjct: 2 FGCVTMSTVEEVEKAMKKFNGYELAGNFLTVSKDDIRNTLPDLP----KRPHAFDSPFSV 57
Query: 167 YVGNLAKTV-TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVT 211
YV L++++ ++ L+ FS+ GKV A++ +S+S G+GFVT
Sbjct: 58 YVTKLSRSIENNEHLEQLFSKHGKVECAELICDKVSSRSRGYGFVT 103
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG I R T D L + ++ V + + +D+ + R F FVT + A+ A++
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 125 LNGTQIGGREIKVN--VTEKPLTTVDFPLVQAEES--------EYVDSPYKVYVGNLAKT 174
+ I GR+++V + + + S E++ + K++VG L
Sbjct: 71 THA--ILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTK-KIFVGGLPAN 127
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNAPLEGQ 233
++ + K +F G++ V + T + GFGF+TF S++ V++ + SF++ L G+
Sbjct: 128 MSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHD--LNGR 185
Query: 234 KIRVNKA 240
++ V +A
Sbjct: 186 QVEVKRA 192
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YVG IP +++L + V + +M K + ++ FAFVT + VE A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N T+ GR+IK + + QA+ ++++GN+ ++ LK +
Sbjct: 172 NNTEFKGRKIKCSTS------------QAKN--------RLFIGNIPRSWGEKDLKKVVT 211
Query: 186 EKGKVLSA--KVSRVPGTSKSSGFGFVTFSSDEDVE 219
+ G ++A V + S + GF F+ + +++ E
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+A RL++GNIPR+ +L +V + V E++ D K +R FAF+
Sbjct: 183 CSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHN 242
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
+ A +K+ K+ ++ D + S V + VYV NL K
Sbjct: 243 NQCAEYGRQKMMSP-----SFKLGDNSPTVSWADPKNSDSSASSQVKA---VYVKNLPKN 294
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
VT + LK F GK+ + + + GFV F+ + A+ + L+GQ
Sbjct: 295 VTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQN 354
Query: 235 IRVNKA 240
+ + A
Sbjct: 355 LECSLA 360
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YVG IP +++L + V + +M K + ++ FAFVT + VE A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N T+ GR+IK + + QA+ ++++GN+ ++ LK +
Sbjct: 172 NNTEFKGRKIKCSTS------------QAKN--------RLFIGNIPRSWGEKDLKKVVT 211
Query: 186 EKGKVLSA--KVSRVPGTSKSSGFGFVTFSSDEDVE 219
+ G ++A V + S + GF F+ + +++ E
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+A RL++GNIPR+ +L +V + V E++ D K +R FAF+
Sbjct: 183 CSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHN 242
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
+ A +K+ K+ ++ D + S V + VYV NL K
Sbjct: 243 NQCAEYGRQKMMSP-----SFKLGDNSPTVSWADPKNSDSSASSQVKA---VYVKNLPKN 294
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
VT + LK F GK+ + + + GFV F+ + A+ + L+GQ
Sbjct: 295 VTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQN 354
Query: 235 IRVNKA 240
+ + A
Sbjct: 355 LECSLA 360
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YVG IP +++L + V + +M K + ++ FAFVT + VE A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N T+ GR+IK + + QA+ ++++GN+ ++ LK +
Sbjct: 172 NNTEFKGRKIKCSTS------------QAKN--------RLFIGNIPRSWGEKDLKKVVT 211
Query: 186 EKGKVLSA--KVSRVPGTSKSSGFGFVTFSSDEDVE 219
+ G ++A V + S + GF F+ + +++ E
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+A RL++GNIPR+ +L +V + V E++ D K +R FAF+
Sbjct: 183 CSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHN 242
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
+ A +K+ K+ ++ D + S V + VYV NL K
Sbjct: 243 NQCAEYGRQKMMSP-----SFKLGDNSPTVSWADPKNSDSSASSQVKA---VYVKNLPKN 294
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
VT + LK F GK+ + + + GFV F+ + A+ + L+GQ
Sbjct: 295 VTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQN 354
Query: 235 IRVNKA 240
+ + A
Sbjct: 355 LECSLA 360
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQ-EHAAVEKAEVMYDKYSGRSRRFAFVT 111
E+++ D ++VG++ +T+ L + + +V+ A+V+ D+ +GRS+ + FV
Sbjct: 144 ERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVR 203
Query: 112 VKTVEDANAAIEKLNGTQIGGREIKVN--------VTEKPLTTVDFPLVQAEESEYVDSP 163
+ A+ ++ G R +++ T +P + + +SE +
Sbjct: 204 FADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYN---PSGGQSENDPNN 260
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
++VGNL VT D L+ F++ G+++ K +P + GFV FS E AI
Sbjct: 261 TTIFVGNLDPNVTDDHLRQVFTQYGELVHVK---IPSGKRC---GFVQFSDRSCAEEAIR 314
Query: 224 SFNNAPLEGQKIRV 237
N L GQ +R+
Sbjct: 315 VLNGTLLGGQNVRL 328
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 22/156 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YVG IP +++L + V + +M K + ++ FAFVT + VE A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N T+ GR+IK + ++ + ++++GN+ ++ LK +
Sbjct: 172 NNTEFKGRKIKCSTSQ--------------------AKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 186 EKGKVLSA--KVSRVPGTSKSSGFGFVTFSSDEDVE 219
+ G ++A V + S + GF F+ + +++ E
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 10/178 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+A RL++GNIPR+ +L +V + V E++ D K +R FAF+
Sbjct: 183 CSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHN 242
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
+ A +K+ K+ ++ D + S V + VYV NL K
Sbjct: 243 NQCAEYGRQKMMSPSF-----KLGDNSPTVSWADPKNSDSSASSQVKA---VYVKNLPKN 294
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEG 232
VT + LK F GK+ + + + GFV F+ + A+ + L+G
Sbjct: 295 VTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDG 352
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA S L+ FS+ G++ +KV T +S GFGFVTF+ ++ +
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI N ++G+ I VN+A
Sbjct: 65 AIEEMNGQDIDGRNITVNEA 84
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
S+ + R +VG + + L + + ++V+ D+ +GRSR F FVT +
Sbjct: 4 SDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMR 63
Query: 120 AAIEKLNGTQIGGREIKVN 138
AIE++NG I GR I VN
Sbjct: 64 DAIEEMNGQDIDGRNITVN 82
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI-- 122
+L++G I + L + V++A +M D+ +GR+R F FV ++ A A I
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVADIVV 64
Query: 123 -EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-----YKVYVGNLAKTVT 176
EK N I GR ++ +K + D ++ SP K++VG LA TVT
Sbjct: 65 QEKHN---IDGRMVEA---KKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVT 118
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNAPLEGQKI 235
K +F + G + V T + GFGF+T+ S+E V+ + +F+ L G+ +
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHE--LNGKMV 176
Query: 236 RVNKA 240
V +A
Sbjct: 177 EVKRA 181
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G + + + L + V A ++ D+ +GRSR F F+T +VE+A++AI+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 125 LNGTQIGGREIKVN-VTEKP 143
L+G + GR ++VN E+P
Sbjct: 103 LDGQDLHGRRVRVNYANERP 122
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G ++ + + L+ FS G+VL A++ T +S GFGF+TF+S E+ +AI +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+++RVN A
Sbjct: 103 LDGQDLHGRRVRVNYA 118
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI-- 122
+L++G I + L + V++A +M D+ +GR+R F FV ++ A A I
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVADIVV 64
Query: 123 -EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-----YKVYVGNLAKTVT 176
EK N I GR ++ +K + D ++ SP K++VG LA TVT
Sbjct: 65 QEKHN---IDGRMVEA---KKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVT 118
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNAPLEGQKI 235
K +F + G + V T + GFGF+T+ S+E V+ + +F+ L G+ +
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHE--LNGKMV 176
Query: 236 RVNKA 240
V +A
Sbjct: 177 EVKRA 181
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R +++G++ + L N V A+V+ +K +G+S + FV T A ++
Sbjct: 116 RTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQA----------EESEYVDSPYKVYVGNLAK 173
NGT + P T F L A S S V+VG+LA
Sbjct: 176 NFNGTMM------------PNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAI 223
Query: 174 TVTSDMLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEG 232
VT ML+ F+ K + AKV T +S G+GFV F + + A++ N
Sbjct: 224 DVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSS 283
Query: 233 QKIRVNKA 240
+ +RV A
Sbjct: 284 RPMRVGVA 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELA-NIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTV 115
++++ +D ++VG++ +T+ L + ++++ A+V+ D +GRS+ + FV
Sbjct: 207 SSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 266
Query: 116 EDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFP--------------------LVQAE 155
+ A+ ++NG R ++V V P T P + Q
Sbjct: 267 SERTRAMTEMNGVYCSSRPMRVGVA-TPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGS 325
Query: 156 ESEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSD 215
+SE + ++VG L ++ + L+ F + G V+S K+ G GFV +
Sbjct: 326 QSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKI------PVGKGCGFVQLADR 379
Query: 216 EDVEAAISSFNNAPLEGQKIRVN 238
++ E AI N + Q +R++
Sbjct: 380 KNAEEAIQGLNGTVIGKQTVRLS 402
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
++YV N+PR+ L ++ H V EV + +G S+ A+VT+ + A A+
Sbjct: 44 QVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALAA 103
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNL 171
L+G+ +GGRE+ V + + T++ P ++ + Y + P+KVYVGNL
Sbjct: 104 LDGSDVGGREMLVKFS---VETLNSPPMR-RRTIYYEGPHKVYVGNL 146
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K+YVG ++ + L+ F+ G VL A+V +S GFGFVTF++ E+ AA
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ + +N L G+ +RVN A
Sbjct: 98 LQAMDNQELHGRTVRVNYA 116
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A +S + +LYVG I + + L + V A V+ D+ GRS+ F FVT T E
Sbjct: 33 AIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSE 92
Query: 117 DANAAIEKLNGTQIGGREIKVN-VTEKP 143
+A+AA++ ++ ++ GR ++VN E+P
Sbjct: 93 EASAALQAMDNQELHGRTVRVNYAQERP 120
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K+++G ++ + L+ FS G VL AK+ T +S GFGF+TF++ E+ +A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ + +N L+G+ +RVN A
Sbjct: 98 LQAMDNKELDGRTVRVNYA 116
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A +S + +L++G + + L + V A+++ D+ +GRSR F F+T T E
Sbjct: 33 AIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSE 92
Query: 117 DANAAIEKLNGTQIGGREIKVN-VTEK 142
+A++A++ ++ ++ GR ++VN TE+
Sbjct: 93 EASSALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K+++G ++ + L+ FS G VL AK+ T +S GFGF+TF++ E+ +A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ + +N L+G+ +RVN A
Sbjct: 98 LQAMDNKELDGRTVRVNYA 116
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A +S + +L++G + + L + V A+++ D+ +GRSR F F+T T E
Sbjct: 33 AIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSE 92
Query: 117 DANAAIEKLNGTQIGGREIKVN-VTEK 142
+A++A++ ++ ++ GR ++VN TE+
Sbjct: 93 EASSALQAMDNKELDGRTVRVNYATER 119
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
++S+A RL++GNIPR+ +L +V + V E++ D K +R +AF+
Sbjct: 423 CSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHN 482
Query: 115 VEDANAAIEKLNGT--QIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-----YKVY 167
+ A + +K+ ++G +FP V E + DS +VY
Sbjct: 483 NQCAEYSRQKMTSPSFKLGD---------------NFPTVNWAEPKNADSSASSQVKEVY 527
Query: 168 VGNLAKTVTSDMLKNFFSEKGKVLSAKVSRV-PGTSKSSGFGFVTFSSDEDVEAAISSFN 226
V NL K VT + LK F GK+ + PG K+ GFV F+ + A+ +
Sbjct: 528 VKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNR-IGFVHFAERSNAMKALKNTE 586
Query: 227 NAPLEGQKIRVNKA 240
L+GQ + + A
Sbjct: 587 KYVLDGQILECSLA 600
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YVG IP ++L + V + + K + +R FAFVT +++E A+ AI++L
Sbjct: 352 VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL 411
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N T+ +IK + + QA+ ++++GN+ ++ LK S
Sbjct: 412 NNTEFKAGKIKCSKS------------QAKS--------RLFIGNIPRSWGEKDLKKVVS 451
Query: 186 EKGKVLSA--KVSRVPGTSKSSGFGFVTFSSDEDVE 219
+ G ++A + + S + G+ F+ + +++ E
Sbjct: 452 DIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAE 487
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQ-EHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +++ L + + + +V+ A+V+ D+ +GR++ + FV + A
Sbjct: 166 DYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRA 225
Query: 122 IEKLNGTQIGGREIKVN-VTEKPLTT----VDFPLVQA-EESEYVDSPYKVYVGNLAKTV 175
+ ++ G R +++ + K L T + Q ++E + ++VGNL V
Sbjct: 226 MTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNV 285
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
T + LK F++ G+++ K+ P + GFV F+ E A+ N L GQ +
Sbjct: 286 TDEHLKQVFTQYGELVHVKI---PSGKRC---GFVQFADRSSAEEALRVLNGTLLGGQNV 339
Query: 236 RV 237
R+
Sbjct: 340 RL 341
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 53 EQAAATQSEAD--RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFV 110
+ A S AD + L++G++ + + L N V +V+ +K + +S + F+
Sbjct: 61 QSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFL 120
Query: 111 TVKTVEDANAAIEKLNGTQI--GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-YKVY 167
+ A ++ NGT + GG+ ++N + + E + DSP Y ++
Sbjct: 121 EFISRAGAERVLQTFNGTIMPNGGQNFRLN----------WATFSSGEKRHDDSPDYTIF 170
Query: 168 VGNLAKTVTSDMLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
VG+LA V+ L F + V AKV T ++ G+GFV F+ + + A++
Sbjct: 171 VGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQ 230
Query: 227 NAPLEGQKIRVNKA 240
+ +R+ A
Sbjct: 231 GVLCSTRPMRIGPA 244
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 17/184 (9%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + + +V+ A+V++D +GRS+ + FV + + A
Sbjct: 186 DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKA 245
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-------VYVGNLAKT 174
+ ++NG R +++ P + + Q +S S ++VG L +
Sbjct: 246 LNEMNGVFCSSRAMRIGAA-TPRKSSGY--QQGGQSNGTPSQSDTDSTNTTIFVGGLDPS 302
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
T++ L+ FS+ G+++S K+ G GFV F++ + E A+ N + Q
Sbjct: 303 ATAEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTVGKQT 356
Query: 235 IRVN 238
+R++
Sbjct: 357 VRLS 360
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 60 SEADRR-LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
S AD + L+VG++ + + L + +V+ +K + ++ + FV + A
Sbjct: 88 SAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTA 147
Query: 119 NAAIEKLNGTQIGGREIKVNVTEKP--LTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVT 176
++ G + + TE+P L F + S+ V ++VG+LA VT
Sbjct: 148 EKVLQTYAG-------MLMPNTEQPFRLNWATFSTGDHKRSDNVPD-LSIFVGDLAADVT 199
Query: 177 SDMLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 235
ML FS+K V +AKV T +S G+GFV F D + A++ N + +
Sbjct: 200 DTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAM 259
Query: 236 RVNKA 240
R+ A
Sbjct: 260 RIGAA 264
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L++ FS++GKV S + P T S GF FVT S ED E I
Sbjct: 64 LYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHL 123
Query: 226 NNAPLEGQKIRVNKA 240
N + LEG+ I V ++
Sbjct: 124 NQSVLEGRYITVERS 138
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
+K++VG L+ T L + FS G+V+ AKV + KS G+GFVTF+S ++ E AI+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAIT 91
Query: 224 SFNNAPLEGQKIRVNKA 240
N L G+ + V+ A
Sbjct: 92 EMNEKALNGRVVFVDYA 108
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L V + + + L + V A ++ D+ +GRSR F F+T +VE+A++AI+ L
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 126 NGTQIGGREIKVN-VTEKP 143
+G + GR ++VN E+P
Sbjct: 112 DGQDLHGRRVRVNYANERP 130
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 159 YVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDV 218
++ + V ++ + + L+ FS G+VL A++ T +S GFGF+TF+S E+
Sbjct: 45 FIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEA 104
Query: 219 EAAISSFNNAPLEGQKIRVNKA 240
+AI + + L G+++RVN A
Sbjct: 105 SSAIQALDGQDLHGRRVRVNYA 126
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA-------AISSFNN 227
++ + L+ FS GKVL AK+ R T + GFGFVTF++ E+ A AI S N
Sbjct: 41 ISYNTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTMSLAIKSMKN 100
Query: 228 APLEGQKIRVNKA 240
L G+K+RVN A
Sbjct: 101 QDLYGRKVRVNYA 113
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ +T L+ FS KGKV+ + P T +S GFGFVT + E+ + +
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 226 NNAPLEGQKIRVNKA 240
N + LEG+ I V KA
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A R++YV N+P L D+L + +E+ + +DK +GRS+ FA KT E ANAA
Sbjct: 163 AQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAA 222
Query: 122 I 122
+
Sbjct: 223 V 223
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP + +L Q V + VM K ++ +AFVT KT E A+ A+++L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N ++ GR+IK + ++ V+ +++++G++ K T + +K +
Sbjct: 160 NNSEFKGRKIKCSPSQ----------VK----------HRLFIGSVPKEWTVEDMKKVVA 199
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
+ G V+S ++ + P +S++ GF F+ + + E + +N+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNS 244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+ RL++G++P+ T +++ +V + V E++ D + S R+R FAF+
Sbjct: 171 CSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFI---- 226
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
E N A + + ++ K++ + ++ D ++ S V + VYV NL +
Sbjct: 227 -EYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKA---VYVKNLPEN 282
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+T + LK F GK+ + + S +GFV F+ A+ + + GQ
Sbjct: 283 ITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQT 342
Query: 235 IRVNKA 240
+ + A
Sbjct: 343 LECSLA 348
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP + +L Q V + VM K ++ +AFVT KT E A+ A+++L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N ++ GR+IK + ++ V+ +++++G++ K T + +K +
Sbjct: 160 NNSEFKGRKIKCSPSQ----------VK----------HRLFIGSVPKEWTVEDMKKVVA 199
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
+ G V+S ++ + P +S++ GF F+ + + E + +N+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNS 244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+ RL++G++P+ T +++ +V + V E++ D + S R+R FAF+
Sbjct: 171 CSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFI---- 226
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
E N A + + ++ K++ + ++ D ++ S V + VYV NL +
Sbjct: 227 -EYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKA---VYVKNLPEN 282
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+T + LK F GK+ + + S +GFV F+ A+ + + GQ
Sbjct: 283 ITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQT 342
Query: 235 IRVNKA 240
+ + A
Sbjct: 343 LECSLA 348
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP + +L Q V + VM K ++ +AFVT KT E A+ A+++L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N ++ GR+IK + ++ V+ +++++G++ K T + +K +
Sbjct: 160 NNSEFKGRKIKCSPSQ----------VK----------HRLFIGSVPKEWTVEDMKKVVA 199
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
+ G V+S ++ + P +S++ GF F+ + + E + +N+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNS 244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+ RL++G++P+ T +++ +V + V E++ D + S R+R FAF+
Sbjct: 171 CSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFI---- 226
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
E N A + + ++ K++ + ++ D ++ S V + VYV NL +
Sbjct: 227 -EYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKA---VYVKNLPEN 282
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+T + LK F GK+ + + S +GFV F+ A+ + + GQ
Sbjct: 283 ITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQT 342
Query: 235 IRVNKA 240
+ + A
Sbjct: 343 LECSLA 348
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP + +L Q V + VM K ++ +AFVT KT E A+ A+++L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N ++ GR+IK + ++ V+ +++++G++ K T + +K +
Sbjct: 160 NNSEFKGRKIKCSPSQ----------VK----------HRLFIGSVPKEWTVEDMKKVVA 199
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
+ G V+S ++ + P +S++ GF F+ + + E + +N+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNS 244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFVTVKT 114
+ S+ RL++G++P+ T +++ +V + V E++ D + S R+R FAF+
Sbjct: 171 CSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFI---- 226
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
E N A + + ++ K++ + ++ D ++ S V + VYV NL +
Sbjct: 227 -EYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKA---VYVKNLPEN 282
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+T + LK F GK+ + + S +GFV F+ A+ + + GQ
Sbjct: 283 ITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQT 342
Query: 235 IRVNKA 240
+ + A
Sbjct: 343 LECSLA 348
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++ V NL K V D LK FS KG++ K+ R KS F F+ F +D++ +AAI
Sbjct: 26 RICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTK-NGKSRQFAFIGFRTDQEAQAAIKY 84
Query: 225 FNNAPLEGQKI 235
FN + L+ Q I
Sbjct: 85 FNKSYLDTQAI 95
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L+V + T + L + + +++A V++DK +GRS+ + FV + V+ A A++
Sbjct: 76 RKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALK 135
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
+ + +I GR + VT+ L A + S KV+VGN+ V+++ L +
Sbjct: 136 EPS-KKIDGR---MTVTQ---------LAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSE 182
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
FS+ G++ + + K+ GF F + ++E + +++
Sbjct: 183 FSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVA 222
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
DR+LYVGN+ +T +L I + VE ++ D +G + F F+ +E A AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 123 EKLNG-TQIGGREIKVN 138
+ LNG +I GR IKV+
Sbjct: 375 QSLNGKLEIAGRTIKVS 391
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + V +A +M D+ +GR+R F FV A I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-----KVYVGNLAKTVTSDM 179
++ I GR ++ +K + D + + SP K++VG L T+T
Sbjct: 65 IDKHIIDGRTVEA---KKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESD 121
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI-SSFNNAPLEGQKIRVN 238
K +F + G + V T + GFGF+T+ S+E V+ + +F+ L G+ + V
Sbjct: 122 FKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHE--LNGKMVEVK 179
Query: 239 KA 240
+A
Sbjct: 180 RA 181
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + V +A +M D+ +GR+R F FV A I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPY-----KVYVGNLAKTVTSDM 179
++ I GR ++ +K + D + + SP K++VG L T+T
Sbjct: 65 IDKHIIDGRTVEA---KKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESD 121
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI-SSFNNAPLEGQKIRVN 238
K +F + G + V T + GFGF+T+ S+E V+ + +F+ L G+ + V
Sbjct: 122 FKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHE--LNGKMVEVK 179
Query: 239 KA 240
+A
Sbjct: 180 RA 181
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
DR+LYVGN+ +T +L I + VE ++ D +G + F F+ +E A AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 123 EKLNG-TQIGGREIKVN 138
+ LNG +I GR IKV+
Sbjct: 375 QSLNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
DR+LYVGN+ +T +L I + VE ++ D +G + F F+ +E A AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 123 EKLNG-TQIGGREIKVN 138
+ LNG +I GR IKV+
Sbjct: 375 QSLNGKLEIAGRTIKVS 391
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K+++G L+ V L++ F+ G V+ A+V T +S GFGFV F+S+E +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ S + L G+ IRV+ A
Sbjct: 94 L-SMDGQDLNGRNIRVSYA 111
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 56 AATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTV 115
AA QS+ R ++VGNIP T ++L I +E V ++ D+ +G+ + + F
Sbjct: 22 AAPQSQ-HRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDE 80
Query: 116 EDANAAIEKLNGTQIGGREIKVNVTE 141
E A +A L G +I GR+++V+ E
Sbjct: 81 ETALSARRNLQGYEINGRQLRVDFAE 106
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 27/158 (17%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG + + T D+L + E V + +M + + +++ FAF+ + VE A A+ +L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
I G++ V ++ T +Y+GN+ KT T + LK
Sbjct: 276 KNPVINGKQCGVTPSQDSDT--------------------LYLGNICKTWTKEALKEKLK 315
Query: 186 EKG-----KVLSAKVSRVPGTSKSSGFGFVTFSSDEDV 218
G + + S GT++ GF F+ FSS D
Sbjct: 316 HYGVTNVEDITLVEDSNDKGTNR--GFAFLEFSSRSDA 351
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
++V+VG L K T D L+ FSE G V ++ P T K+ GF F+ F + E + A++
Sbjct: 214 FEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVA 273
Query: 224 SFNNAPLEGQKIRV 237
N + G++ V
Sbjct: 274 ELKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 27/158 (17%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG + + T D+L + E V + +M + + +++ FAF+ + VE A A+ +L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
I G++ V ++ T +Y+GN+ KT T + LK
Sbjct: 276 KNPVINGKQCGVTPSQDSDT--------------------LYLGNICKTWTKEALKEKLK 315
Query: 186 EKG-----KVLSAKVSRVPGTSKSSGFGFVTFSSDEDV 218
G + + S GT++ GF F+ FSS D
Sbjct: 316 HYGVTNVEDITLVEDSNDKGTNR--GFAFLEFSSRSDA 351
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
++V+VG L K T D L+ FSE G V ++ P T K+ GF F+ F + E + A++
Sbjct: 214 FEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVA 273
Query: 224 SFNNAPLEGQKIRV 237
N + G++ V
Sbjct: 274 ELKNPVINGKQCGV 287
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 27/158 (17%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG + + T D+L + E V + +M + + +++ FAF+ + VE A A+ +L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
I G++ V ++ T +Y+GN+ KT T + LK
Sbjct: 277 KNPVINGKQCGVTPSQDSDT--------------------LYLGNICKTWTKEALKEKLK 316
Query: 186 EKG-----KVLSAKVSRVPGTSKSSGFGFVTFSSDEDV 218
G + + S GT++ GF F+ FSS D
Sbjct: 317 HYGVTNVEDITLVEDSNDKGTNR--GFAFLEFSSRSDA 352
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
++V+VG L K T D L+ FSE G V ++ P T K+ GF F+ F + E + A++
Sbjct: 215 FEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVA 274
Query: 224 SFNNAPLEGQKIRV 237
N + G++ V
Sbjct: 275 ELKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 27/158 (17%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG + + T D+L + E V + +M + + +++ FAF+ + VE A A+ +L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
I G++ V ++ T +Y+GN+ KT T + LK
Sbjct: 277 KNPVINGKQCGVTPSQDSDT--------------------LYLGNICKTWTKEALKEKLK 316
Query: 186 EKG-----KVLSAKVSRVPGTSKSSGFGFVTFSSDEDV 218
G + + S GT++ GF F+ FSS D
Sbjct: 317 HYGVTNVEDITLVEDSNDKGTNR--GFAFLEFSSRSDA 352
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
++V+VG L K T D L+ FSE G V ++ P T K+ GF F+ F + E + A++
Sbjct: 215 FEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVA 274
Query: 224 SFNNAPLEGQKIRV 237
N + G++ V
Sbjct: 275 ELKNPVINGKQCGV 288
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A E D RL+ G++ + +D L+ + A V+ DK +G+++ + F++
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPA 184
Query: 117 DANAAIEKLNGTQIGGREIKV 137
D AA++++NG +G R IK+
Sbjct: 185 DLAAALKEMNGKYVGNRPIKL 205
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 157 SEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDE 216
+E+ + Y+++ G+L V D+L F+ A+V R T K+ G+GF++F++
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPA 184
Query: 217 DVEAAISSFNNAPLEGQKIRVNKA 240
D+ AA+ N + + I++ K+
Sbjct: 185 DLAAALKEMNGKYVGNRPIKLRKS 208
>Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 236
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ FS++GKV S + P T S GF FVT + ED I
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 226 NNAPLEGQKIRVNK 239
N + LEG+ I V +
Sbjct: 193 NQSILEGRYITVER 206
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
++YVG IP + D++ + + + + M +G+ R A ++ KT A A+
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL-A 279
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
L+G +GG +K+ + T P E + ++YVG+L+ +T + L+ FF
Sbjct: 280 LDGADMGGLFLKIQPCKATQATRFTP-------EMKEGYNRIYVGSLSWEITEEELRKFF 332
Query: 185 SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
S V + ++ T + G+ V F + ++ A+ + + + L G+ +R++ A
Sbjct: 333 S-NCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRISCA 386
>Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 213
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ FS++GKV S + P T S GF FVT + ED I
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 226 NNAPLEGQKIRVNK 239
N + LEG+ I V +
Sbjct: 193 NQSILEGRYITVER 206
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 60 SEADRR-LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
S AD + L+VG++ + + L + +V+ +K + ++ + FV + A
Sbjct: 88 SAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTA 147
Query: 119 NAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
++ G + E + +T D + S+ V ++VG+LA VT
Sbjct: 148 EKVLQTYAGMLMPNTEQPFRLNWATFSTGDH-----KRSDNVPD-LSIFVGDLAADVTDT 201
Query: 179 MLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
ML FS+K V +AKV T +S G+GFV F D + A++ N + +R+
Sbjct: 202 MLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRI 261
Query: 238 NKA 240
A
Sbjct: 262 GAA 264
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 140 TEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVP 199
++ PL + F ++ + + SP K+++ L++ T + L FS G++L AKV
Sbjct: 14 SQSPLVSSHFTSIRLNST--LTSP-KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDR 70
Query: 200 GTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
G+ +S GF FV++S+ E+ E A N L+G I V+ A
Sbjct: 71 GSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWVIFVDPA 111
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YVG LA+ V +L F G + K T K FGFVTF ED AA+ +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 226 NNAPLEGQKIRVNKA 240
+ A L G+ + VN A
Sbjct: 72 DGAELYGRVLTVNYA 86
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
DR+LYVGN+ +T L I + +E ++ D +G + F FV +E A AA
Sbjct: 302 DRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA- 360
Query: 123 EKLNGT-QIGGREIKVN 138
+ LNG +I GR IKV+
Sbjct: 361 QSLNGKLEIAGRTIKVS 377
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG + ++ L + V + ++YDK SGR+R F FV + A +A +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 125 LNGTQIGGREIKVNVT-EKP 143
++G + GR +++N EKP
Sbjct: 97 MDGKALLGRPLRINFALEKP 116
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
KV+VG LA +D ++ +F + G +L A + T KS G+GFVTF E A +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 225 FNNAPLEGQKIRVNKA 240
N ++G++ N A
Sbjct: 77 PNPV-IDGRRANCNIA 91
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + +V+ +K + +S + F+ T A ++
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 124 KLNGTQI--GGREIKVNVTEKPLTTVDFPLVQAEE--SEYVDSP-YKVYVGNLAKTVTSD 178
NGT + GG+ ++N + A E S D P + ++VG+LA VT
Sbjct: 120 TYNGTIMPNGGQNYRLN----------WATFSAGERSSRQDDGPDHTIFVGDLAADVTDY 169
Query: 179 MLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+L+ F + V AKV T +S G+GFV F+ + + A++ + +R+
Sbjct: 170 LLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRI 229
Query: 238 NKA 240
A
Sbjct: 230 GPA 232
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + +V+ +K + +S + F+ T A ++
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 124 KLNGTQI--GGREIKVNVTEKPLTTVDFPLVQAEE--SEYVDSP-YKVYVGNLAKTVTSD 178
NGT + GG+ ++N + A E S D P + ++VG+LA VT
Sbjct: 120 TYNGTIMPNGGQNYRLN----------WATFSAGERSSRQDDGPDHTIFVGDLAADVTDY 169
Query: 179 MLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+L+ F + V AKV T +S G+GFV F+ + + A++ + +R+
Sbjct: 170 LLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRI 229
Query: 238 NKA 240
A
Sbjct: 230 GPA 232
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + +V+ +K + +S + F+ T A ++
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 124 KLNGTQI--GGREIKVNVTEKPLTTVDFPLVQAEE--SEYVDSP-YKVYVGNLAKTVTSD 178
NGT + GG+ ++N + A E S D P + ++VG+LA VT
Sbjct: 120 TYNGTIMPNGGQNYRLN----------WATFSAGERSSRQDDGPDHTIFVGDLAADVTDY 169
Query: 179 MLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+L+ F + V AKV T +S G+GFV F+ + + A++ + +R+
Sbjct: 170 LLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRI 229
Query: 238 NKA 240
A
Sbjct: 230 GPA 232
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A R+++V + T + L ++ +E + + DK SG+S+ +AF+ K A
Sbjct: 163 AHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
+++ IG R + SEY K++V N++ + L
Sbjct: 223 LKQPQKV-IGNRTTSCQLASAGPVPAPP-PNAPPVSEYTQR--KIFVSNVSSDIDPQKLL 278
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FF + G+V + T K GF + + E + A+ N EG + KA
Sbjct: 279 EFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTLYCQKA 336
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A R+++V + T + L ++ +E + + DK SG+S+ +AF+ K A
Sbjct: 163 AHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
+++ IG R + SEY K++V N++ + L
Sbjct: 223 LKQPQKV-IGNRTTSCQLASAGPVPAPP-PNAPPVSEYTQR--KIFVSNVSSDIDPQKLL 278
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FF + G+V + T K GF + + E + A+ N EG + KA
Sbjct: 279 EFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTLYCQKA 336
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
A R+++V + T + L ++ +E + + DK SG+S+ +AF+ K A
Sbjct: 163 AHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
+++ IG R + SEY K++V N++ + L
Sbjct: 223 LKQPQKV-IGNRTTSCQLASAGPVPAPP-PNAPPVSEYTQR--KIFVSNVSSDIDPQKLL 278
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FF + G+V + T K GF + + E + A+ N EG + KA
Sbjct: 279 EFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTLYCQKA 336
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 6/183 (3%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
+ R+++V + T+ L N ++ +E + + DK SG+S+ + F+ K A A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 122 IEKLNGTQIGGREIKVNVTE-KPLTTVDFPLVQAEESEYVDSPY---KVYVGNLAKTVTS 177
+++ +IG R + P+ S Y K+Y+ N+ + +
Sbjct: 185 LKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
L FFS G++ + T K GF + S E A+ + EG +
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKE-FEGHILHC 302
Query: 238 NKA 240
KA
Sbjct: 303 QKA 305