Miyakogusa Predicted Gene

Lj3g3v0882650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0882650.1 Non Characterized Hit- tr|B7FH81|B7FH81_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,83.33,0,seg,NULL; coiled-coil,NULL; no
description,Translation protein SH3-like, subgroup; 60S RIBOSOMAL
PRO,CUFF.41587.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g098090.1 | 60S ribosomal L6-like protein | HC | chr5:4294...   317   5e-87
Medtr3g094570.1 | 60S ribosomal L6-like protein | HC | chr3:4315...   313   7e-86
Medtr3g094860.1 | 60S ribosomal L6-like protein | HC | chr3:4329...   312   2e-85
Medtr8g091910.1 | 60S ribosomal L6-like protein | HC | chr8:3835...   291   3e-79

>Medtr5g098090.1 | 60S ribosomal L6-like protein | HC |
           chr5:42942860-42945322 | 20130731
          Length = 234

 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 161/234 (68%), Positives = 177/234 (75%), Gaps = 2/234 (0%)

Query: 1   MAPRK--TPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLAS 58
           MAP K    RV+RN DLIRGIGK+S+SQMYHKKGIW IKAKNGGVFPHHD  PKP+T   
Sbjct: 1   MAPTKERASRVSRNSDLIRGIGKFSKSQMYHKKGIWVIKAKNGGVFPHHDPKPKPETAVE 60

Query: 59  KPPKFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLL 118
           KPPKFYPADDV               RASI+PGTVLILLAGRFKGKRVVFLKQLPSGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 119 VTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXX 178
           VTGPFKINGVPLR VNQ+YVIGTSTKVDISGVNVD  +D+YF                  
Sbjct: 121 VTGPFKINGVPLRCVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFEL 180

Query: 179 XXXXXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
                  LPQ+K+D Q TVD+A++KAIDSVPDLK+YLGARFSLK+G+KPHELVF
Sbjct: 181 DKEEKKVLPQQKKDDQKTVDAALIKAIDSVPDLKTYLGARFSLKAGVKPHELVF 234


>Medtr3g094570.1 | 60S ribosomal L6-like protein | HC |
           chr3:43155807-43152682 | 20130731
          Length = 233

 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 176/233 (75%), Gaps = 1/233 (0%)

Query: 1   MAPR-KTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASK 59
           MAP+ +T RV+RNP+LIRGIGKYSRS MYHK+G+WAIKAK+GG FP HD   KP     K
Sbjct: 1   MAPKQRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 60  PPKFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 119
           PPKFYPADDV               RASI+PGTVLILLAGRFKGKRVVFLKQLPSGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 120 TGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXXX 179
           TGPFKINGVPLRRVNQ+YVIGTSTKVDIS VNVDKF+D+YF                   
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEAD 180

Query: 180 XXXXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
                 LPQEK+D Q TVD+ +LKAIDSVPDLK+YLGARFSLK+G+KPHELVF
Sbjct: 181 KEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233


>Medtr3g094860.1 | 60S ribosomal L6-like protein | HC |
           chr3:43296119-43298596 | 20130731
          Length = 233

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/233 (67%), Positives = 175/233 (75%), Gaps = 1/233 (0%)

Query: 1   MAPR-KTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASK 59
           MAP+ +T RV+RNP+LIRGIGKYSRS MYHK+G+WAIKAK+GG FP HD   KP     K
Sbjct: 1   MAPKTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 60  PPKFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 119
           PPKFYPADDV               RASI+PGTVLILLAGRFKGKRVVFLKQLPSGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 120 TGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXXX 179
           TGPFKINGVPLRRVNQ+YVIGTSTKVDIS VN DKF+D+YF                   
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNADKFDDKYFSKESQKKTKKGEGEFFEAD 180

Query: 180 XXXXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
                 LPQEK+D Q TVD+ +LKAIDSVPDLK+YLGARFSLK+G+KPHELVF
Sbjct: 181 KEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233


>Medtr8g091910.1 | 60S ribosomal L6-like protein | HC |
           chr8:38352374-38354087 | 20130731
          Length = 219

 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/234 (64%), Positives = 169/234 (72%), Gaps = 17/234 (7%)

Query: 1   MAPRK--TPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLAS 58
           MAP K   PRV+RNPDLIRGIGK+S+SQMYHKKGIWAIK               P+T A 
Sbjct: 1   MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIK---------------PETAAE 45

Query: 59  KPPKFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLL 118
           KPPKFYPADDV               RASI+PGTVLILLAGRFKGKRVVFLKQLPSGLLL
Sbjct: 46  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 105

Query: 119 VTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXX 178
           VTGPFKINGVPLRRVNQ+YVIGTSTKVDISGVNVD  +D+YF                  
Sbjct: 106 VTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFES 165

Query: 179 XXXXXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
                  LPQ+K+D Q TVD+A++KAI+SVPDLK+YLGARFSLK+G+KPHELVF
Sbjct: 166 DKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF 219