Miyakogusa Predicted Gene

Lj3g3v0860600.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0860600.3 tr|Q7XLQ4|Q7XLQ4_ORYSJ OSJNBa0044M19.2 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0044M19.2
PE,36.76,3e-18,KH_1,K Homology domain, type 1; KH_TYPE_1,K Homology
domain, type 1; Eukaryotic type KH-domain (KH-d,CUFF.41586.3
         (783 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083770.1 | RNA-binding KH domain protein | HC | chr3:3779...   837   0.0  
Medtr3g083770.2 | RNA-binding KH domain protein | HC | chr3:3779...   830   0.0  
Medtr3g083770.3 | RNA-binding KH domain protein | HC | chr3:3779...   457   e-128
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104...   102   1e-21

>Medtr3g083770.1 | RNA-binding KH domain protein | HC |
           chr3:37796169-37790828 | 20130731
          Length = 804

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/787 (60%), Positives = 538/787 (68%), Gaps = 45/787 (5%)

Query: 1   MIAEFDPTSALEPHKMSRASSAALTSGQKPSKFAAKSGFVIPKNKLSGSLVPVFRGAKKH 60
           M A+FD TSA EPHKMS A+S   +S QK SKF AKSGFVIPKNKL GSLVP+ RGAKK 
Sbjct: 1   MTAKFDLTSASEPHKMSGATSTTPSSNQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKD 60

Query: 61  GVTGGAVNEESLKQIERVTKWGPDLTQDASVKRAKAMALQIRVDQITKQLESEELQIGDT 120
           GVTG  VNEES KQIER ++WGPD TQDA V++AK +ALQIRVDQI+K LESE  +I DT
Sbjct: 61  GVTG-VVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKMLESENPEIVDT 119

Query: 121 QNLPIASENPNQSTSGSDMNSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEASI 180
           QN P+  ENP  S +GS +NSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKE ++
Sbjct: 120 QNSPLEDENPGASKAGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNV 179

Query: 181 PLPVQEHPGHKFIGLIYGPEGDTQKRLEKETGAKIKIHGTRADTGDKGEIKPGTDIQCSY 240
           PLPVQE+PG+KF+GLIYG EGD QKRLEKETG KIKIHGT+ADTG+KGEIKPGTD+QC Y
Sbjct: 180 PLPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGY 239

Query: 241 QEMHVNISADSFDKVDAAVSIIELLLSSITGNSAAVSTP-VSVSGDSTNVPSQSQDAPPS 299
           QEMHVNISADSFDKVDAA+SIIELL+SS+TGNSAA STP +SVSGD+TNV +Q++D  PS
Sbjct: 240 QEMHVNISADSFDKVDAAISIIELLISSVTGNSAAGSTPSLSVSGDTTNVLNQNKDTTPS 299

Query: 300 NAVSLPSENQAVLQPAAVTQMHGDHFQYPGPWFSVAPSHTPLGAASGSSVPPYPP--GRT 357
           +A+SL  ENQAV QPA  TQM GDHFQY G WFS  PSHTPL A+SG+ VPP P    R 
Sbjct: 300 HAISLSLENQAVFQPATNTQMQGDHFQYSGSWFSPLPSHTPLFASSGTVVPPNPQHLARA 359

Query: 358 PHFPSQTMTPSNMVSTFGAQXXXXXXXXXXXXXXXNHHVSMQALPPRPMLQHSHMNQASP 417
           P FPSQTM+PS+++S FGAQ               N   SMQA PP  +LQHS   Q +P
Sbjct: 360 PPFPSQTMSPSSLISAFGAQ---PPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNP 416

Query: 418 LGHIVPPRNPSSVPVQNFSAPTNASVSFQVTLSQPTPIGHLQTPVSSMPQPMSGISPSPM 477
            G + PPRNPS +  QN SAPTNAS+SF V+LSQPTP G LQT VSS PQP+SGISPSP+
Sbjct: 417 FGQVGPPRNPSVIRAQNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPI 476

Query: 478 PNQPLTPLGVSPRQSGGPVS------LSNLGXXXXXXXXXXXXXSLGQSATF-------- 523
            NQPLTP GVS    GGPV+      LSN+G             SLG             
Sbjct: 477 ANQPLTPHGVSTGLGGGPVNVKMSVGLSNMGPMASPAVPPTRPVSLGPQPDVEYKSPQPN 536

Query: 524 --------SQHQXXXXXXXXXXXXXXXXXXTYSSR------PVSFPSPRMSPSNPLPQQS 569
                   S H                   T  S       PVSFPSPR+S   PL QQS
Sbjct: 537 MLMIPRPGSIHPHHAGMSPRPPFSLVPMPGTVHSTGNHLLGPVSFPSPRISSPLPLAQQS 596

Query: 570 GTPNSFSGVTPYQAHATPLVLTTSNSGNFTFQSQRPNADYSQVASRPNSQATAEGGIQEX 629
           G P S S  +    H  PL    SNSGNFTFQ QRPNADY Q   RPNSQAT +GG QE 
Sbjct: 597 GIPTSASQYS----HVNPLASMPSNSGNFTFQGQRPNADYYQAVPRPNSQATTQGGTQEP 652

Query: 630 XXXXXXXXXXXXXXDQRLQMFPRTQSPSQVDQTQAHLFNLPFGGRSGSVSIPPRHTTFPY 689
                         DQ LQ F RTQ  +Q+D  QA++   PFGG SGSVS PPRH  FPY
Sbjct: 653 PSGPRPPPFRFAVPDQPLQSFQRTQVSNQLDPDQAYVSAAPFGGSSGSVSFPPRHPAFPY 712

Query: 690 AGQPGPRSPAPQMGMQNFISAPQRPNFPTPGVQGGMHIRQNYP-QRAWPDIPMPLNQKFG 748
           AGQP PRS  PQMGM+NFI APQ  N  +P VQ GMH RQ+YP Q AW     PLNQKF 
Sbjct: 713 AGQPSPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAW-----PLNQKFS 767

Query: 749 NNHPMAS 755
           NN  +AS
Sbjct: 768 NNPSLAS 774


>Medtr3g083770.2 | RNA-binding KH domain protein | HC |
           chr3:37796223-37790828 | 20130731
          Length = 803

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/787 (60%), Positives = 537/787 (68%), Gaps = 46/787 (5%)

Query: 1   MIAEFDPTSALEPHKMSRASSAALTSGQKPSKFAAKSGFVIPKNKLSGSLVPVFRGAKKH 60
           M A+FD TSA EPHKMS A+S   +S QK SKF AKSGFVIPKNKL GSLVP+ RGAKK 
Sbjct: 1   MTAKFDLTSASEPHKMSGATSTTPSSNQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKD 60

Query: 61  GVTGGAVNEESLKQIERVTKWGPDLTQDASVKRAKAMALQIRVDQITKQLESEELQIGDT 120
           GVTG  VNEES KQIER ++WGPD TQDA V++AK +ALQIRVDQI+K LESE  +I DT
Sbjct: 61  GVTG-VVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKMLESENPEIVDT 119

Query: 121 QNLPIASENPNQSTSGSDMNSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEASI 180
           QN P+  ENP  S +GS +NSK SEMLELEKREAIGEILKLDPSYKPPPGFKPLLKE ++
Sbjct: 120 QNSPLEDENPGASKAGSQINSK-SEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNV 178

Query: 181 PLPVQEHPGHKFIGLIYGPEGDTQKRLEKETGAKIKIHGTRADTGDKGEIKPGTDIQCSY 240
           PLPVQE+PG+KF+GLIYG EGD QKRLEKETG KIKIHGT+ADTG+KGEIKPGTD+QC Y
Sbjct: 179 PLPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGY 238

Query: 241 QEMHVNISADSFDKVDAAVSIIELLLSSITGNSAAVSTP-VSVSGDSTNVPSQSQDAPPS 299
           QEMHVNISADSFDKVDAA+SIIELL+SS+TGNSAA STP +SVSGD+TNV +Q++D  PS
Sbjct: 239 QEMHVNISADSFDKVDAAISIIELLISSVTGNSAAGSTPSLSVSGDTTNVLNQNKDTTPS 298

Query: 300 NAVSLPSENQAVLQPAAVTQMHGDHFQYPGPWFSVAPSHTPLGAASGSSVPPYPP--GRT 357
           +A+SL  ENQAV QPA  TQM GDHFQY G WFS  PSHTPL A+SG+ VPP P    R 
Sbjct: 299 HAISLSLENQAVFQPATNTQMQGDHFQYSGSWFSPLPSHTPLFASSGTVVPPNPQHLARA 358

Query: 358 PHFPSQTMTPSNMVSTFGAQXXXXXXXXXXXXXXXNHHVSMQALPPRPMLQHSHMNQASP 417
           P FPSQTM+PS+++S FGAQ               N   SMQA PP  +LQHS   Q +P
Sbjct: 359 PPFPSQTMSPSSLISAFGAQ---PPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNP 415

Query: 418 LGHIVPPRNPSSVPVQNFSAPTNASVSFQVTLSQPTPIGHLQTPVSSMPQPMSGISPSPM 477
            G + PPRNPS +  QN SAPTNAS+SF V+LSQPTP G LQT VSS PQP+SGISPSP+
Sbjct: 416 FGQVGPPRNPSVIRAQNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPI 475

Query: 478 PNQPLTPLGVSPRQSGGPVS------LSNLGXXXXXXXXXXXXXSLGQSATF-------- 523
            NQPLTP GVS    GGPV+      LSN+G             SLG             
Sbjct: 476 ANQPLTPHGVSTGLGGGPVNVKMSVGLSNMGPMASPAVPPTRPVSLGPQPDVEYKSPQPN 535

Query: 524 --------SQHQXXXXXXXXXXXXXXXXXXTYSSR------PVSFPSPRMSPSNPLPQQS 569
                   S H                   T  S       PVSFPSPR+S   PL QQS
Sbjct: 536 MLMIPRPGSIHPHHAGMSPRPPFSLVPMPGTVHSTGNHLLGPVSFPSPRISSPLPLAQQS 595

Query: 570 GTPNSFSGVTPYQAHATPLVLTTSNSGNFTFQSQRPNADYSQVASRPNSQATAEGGIQEX 629
           G P S S  +    H  PL    SNSGNFTFQ QRPNADY Q   RPNSQAT +GG QE 
Sbjct: 596 GIPTSASQYS----HVNPLASMPSNSGNFTFQGQRPNADYYQAVPRPNSQATTQGGTQEP 651

Query: 630 XXXXXXXXXXXXXXDQRLQMFPRTQSPSQVDQTQAHLFNLPFGGRSGSVSIPPRHTTFPY 689
                         DQ LQ F RTQ  +Q+D  QA++   PFGG SGSVS PPRH  FPY
Sbjct: 652 PSGPRPPPFRFAVPDQPLQSFQRTQVSNQLDPDQAYVSAAPFGGSSGSVSFPPRHPAFPY 711

Query: 690 AGQPGPRSPAPQMGMQNFISAPQRPNFPTPGVQGGMHIRQNYP-QRAWPDIPMPLNQKFG 748
           AGQP PRS  PQMGM+NFI APQ  N  +P VQ GMH RQ+YP Q AW     PLNQKF 
Sbjct: 712 AGQPSPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAW-----PLNQKFS 766

Query: 749 NNHPMAS 755
           NN  +AS
Sbjct: 767 NNPSLAS 773


>Medtr3g083770.3 | RNA-binding KH domain protein | HC |
           chr3:37794327-37790828 | 20130731
          Length = 563

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 295/545 (54%), Positives = 332/545 (60%), Gaps = 44/545 (8%)

Query: 243 MHVNISADSFDKVDAAVSIIELLLSSITGNSAAVSTP-VSVSGDSTNVPSQSQDAPPSNA 301
           MHVNISADSFDKVDAA+SIIELL+SS+TGNSAA STP +SVSGD+TNV +Q++D  PS+A
Sbjct: 1   MHVNISADSFDKVDAAISIIELLISSVTGNSAAGSTPSLSVSGDTTNVLNQNKDTTPSHA 60

Query: 302 VSLPSENQAVLQPAAVTQMHGDHFQYPGPWFSVAPSHTPLGAASGSSVPPYPP--GRTPH 359
           +SL  ENQAV QPA  TQM GDHFQY G WFS  PSHTPL A+SG+ VPP P    R P 
Sbjct: 61  ISLSLENQAVFQPATNTQMQGDHFQYSGSWFSPLPSHTPLFASSGTVVPPNPQHLARAPP 120

Query: 360 FPSQTMTPSNMVSTFGAQXXXXXXXXXXXXXXXNHHVSMQALPPRPMLQHSHMNQASPLG 419
           FPSQTM+PS+++S FGAQ               N   SMQA PP  +LQHS   Q +P G
Sbjct: 121 FPSQTMSPSSLISAFGAQPPPVSGFHPFIP---NQQFSMQAPPPTQILQHSQWPQTNPFG 177

Query: 420 HIVPPRNPSSVPVQNFSAPTNASVSFQVTLSQPTPIGHLQTPVSSMPQPMSGISPSPMPN 479
            + PPRNPS +  QN SAPTNAS+SF V+LSQPTP G LQT VSS PQP+SGISPSP+ N
Sbjct: 178 QVGPPRNPSVIRAQNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIAN 237

Query: 480 QPLTPLGVSPRQSGGPVS------LSNLGXXXXXXXXXXXXXSLGQSATF---------- 523
           QPLTP GVS    GGPV+      LSN+G             SLG               
Sbjct: 238 QPLTPHGVSTGLGGGPVNVKMSVGLSNMGPMASPAVPPTRPVSLGPQPDVEYKSPQPNML 297

Query: 524 ------SQHQXXXXXXXXXXXXXXXXXXTYSSR------PVSFPSPRMSPSNPLPQQSGT 571
                 S H                   T  S       PVSFPSPR+S   PL QQSG 
Sbjct: 298 MIPRPGSIHPHHAGMSPRPPFSLVPMPGTVHSTGNHLLGPVSFPSPRISSPLPLAQQSGI 357

Query: 572 PNSFSGVTPYQAHATPLVLTTSNSGNFTFQSQRPNADYSQVASRPNSQATAEGGIQEXXX 631
           P S S  +    H  PL    SNSGNFTFQ QRPNADY Q   RPNSQAT +GG QE   
Sbjct: 358 PTSASQYS----HVNPLASMPSNSGNFTFQGQRPNADYYQAVPRPNSQATTQGGTQEPPS 413

Query: 632 XXXXXXXXXXXXDQRLQMFPRTQSPSQVDQTQAHLFNLPFGGRSGSVSIPPRHTTFPYAG 691
                       DQ LQ F RTQ  +Q+D  QA++   PFGG SGSVS PPRH  FPYAG
Sbjct: 414 GPRPPPFRFAVPDQPLQSFQRTQVSNQLDPDQAYVSAAPFGGSSGSVSFPPRHPAFPYAG 473

Query: 692 QPGPRSPAPQMGMQNFISAPQRPNFPTPGVQGGMHIRQNYP-QRAWPDIPMPLNQKFGNN 750
           QP PRS  PQMGM+NFI APQ  N  +P VQ GMH RQ+YP Q AW     PLNQKF NN
Sbjct: 474 QPSPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAW-----PLNQKFSNN 528

Query: 751 HPMAS 755
             +AS
Sbjct: 529 PSLAS 533


>Medtr4g036415.1 | splicing factor-like protein | HC |
           chr4:13104578-13109685 | 20130731
          Length = 767

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 84/133 (63%), Gaps = 15/133 (11%)

Query: 142 KKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEASIPLPVQEHPGHKFIGLIYGPEG 201
           +  E  + E++E I +I+K +P++KPP  ++P   +  + +P++E+PG+ FIGLI GP G
Sbjct: 180 RARERFQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRG 239

Query: 202 DTQKRLEKETGAKIKIHGTRADTGDKGEIKPG-----TDIQ---CSYQEMHVNISADSFD 253
           +TQKR+EKETGAKI I G       KG +K G      D++      +++HV + AD+ D
Sbjct: 240 NTQKRMEKETGAKIVIRG-------KGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTAD 292

Query: 254 KVDAAVSIIELLL 266
            ++AA  ++E LL
Sbjct: 293 ALEAAAGMVEKLL 305