Miyakogusa Predicted Gene

Lj3g3v0850570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0850570.1 tr|G7IWL8|G7IWL8_MEDTR E3 ubiquitin-protein
ligase makorin OS=Medicago truncatula GN=MTR_3g028190 PE,83.02,0,no
description,Zinc finger, RING/FYVE/PHD-type; ZF_RING_1,Zinc finger,
RING-type, conserved site; zi,CUFF.41582.1
         (318 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g028190.1 | makorin RING-zinc-finger protein | HC | chr3:8...   540   e-154
Medtr3g028170.1 | makorin RING-zinc-finger protein | HC | chr3:8...   302   3e-82

>Medtr3g028190.1 | makorin RING-zinc-finger protein | HC |
           chr3:8931474-8934895 | 20130731
          Length = 357

 Score =  540 bits (1392), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/318 (80%), Positives = 275/318 (86%), Gaps = 2/318 (0%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGVCAYGSRCRYDHVKXXXXX 60
           MSKRVLCKFFAHGACLKGEHCEFSHDWK PPNNICT+YQKGVCAYGSRCRYDHVK     
Sbjct: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASRAQ 60

Query: 61  XXXXXXXVVEHQPLVSGSFVFGNPRISSNGVAAAAESSLSKSPYIHTSKPAWNQESNYHD 120
                  + EHQPLVS S V GN R++SNGVA AAE SL  +P++  S+ AWNQES   D
Sbjct: 61  SSTPSSSITEHQPLVSESAVLGNTRVTSNGVATAAEFSLFSTPFVLPSEQAWNQESAQLD 120

Query: 121 LLGEDDVDVGQPITTLPSELSICSFAAVGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEE 180
            L EDDV   Q + T PSEL ICSFAA GNCPRGE+CPH+HGDLCP+CG+ CLHPFRPEE
Sbjct: 121 FLREDDV--VQSVITSPSELPICSFAAAGNCPRGEQCPHVHGDLCPSCGRQCLHPFRPEE 178

Query: 181 REEHIKSCEDKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIR 240
           REEH+ SC +KQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFC+SCIR
Sbjct: 179 REEHMMSCRNKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCVSCIR 238

Query: 241 NWRNSNPTLGMDVNGTLRACPICRKLSYFVVPSVIWYSTSEEKQEIVDTYKAKLKSIDCK 300
           NWR+SNPTLGMDVN TLRACPICRKLSYFVVPSVIWY+TSEEK EI+DTYKAKLKSIDCK
Sbjct: 239 NWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKMEIIDTYKAKLKSIDCK 298

Query: 301 HFDFGDGNCPFGTSCFYK 318
           HFDFG+GNCPFGTSCFYK
Sbjct: 299 HFDFGEGNCPFGTSCFYK 316


>Medtr3g028170.1 | makorin RING-zinc-finger protein | HC |
           chr3:8918386-8925048 | 20130731
          Length = 481

 Score =  302 bits (773), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/323 (50%), Positives = 202/323 (62%), Gaps = 27/323 (8%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGVCAYGSRCRYDHVKXXXXX 60
           MS RV CKF+A G CLKG+ C+FSH  KD  ++IC+YYQKG CAYGSRCRY HV+     
Sbjct: 1   MSNRV-CKFYARGVCLKGDQCDFSHQRKDTASDICSYYQKGSCAYGSRCRYKHVRASQAS 59

Query: 61  XXXXXXXVVEHQPLVSGSFVFGNPRISSNGVAAAAESSLSKSPYIHTSKPAWNQESNYHD 120
                                  P   S  VA+     ++K P          Q  +   
Sbjct: 60  SSASMVSDSA------------VPVARSAKVASNWVPKVTKVPSPDKRGVKGLQRKH--- 104

Query: 121 LLGEDDVDVGQPIT--TLPSELSICSFAAVGNCPRGEKCPHIHGDLCPTCGKHCLHPFRP 178
              +D  DVG+  T    P E   C FAA  NCP G  C  IHG+ C  C K+CLHP   
Sbjct: 105 ---QDSTDVGESSTGSARPHENLFCKFAAA-NCPGG--CSRIHGNQCLYCRKYCLHPTDK 158

Query: 179 EEREEHIKSCEDKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISC 238
           +E+E H+++C+ K+K+L ALK S+EIEC+VCLERVLSKP  +E KFGLL ECDH FC+SC
Sbjct: 159 KEKENHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSC 218

Query: 239 IRNWRNSNPTLGMDV---NGTLRACPICRKLSYFVVPSVIWYSTSEEKQEIVDTYKAKLK 295
           IRNWR+S PT  M++     T+R CP+CRKLSYFV+PS IW++T EEKQEI+D YKA  +
Sbjct: 219 IRNWRSSAPTSAMEIGSNTNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCR 278

Query: 296 SIDCKHFDFGDGNCPFGTSCFYK 318
            IDCKHFD G+GNCPFG SCFYK
Sbjct: 279 LIDCKHFDSGNGNCPFGASCFYK 301