Miyakogusa Predicted Gene

Lj3g3v0838310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0838310.1 Non Characterized Hit- tr|A9NXG9|A9NXG9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,33.83,5e-18,seg,NULL; PEI1, NUCLEIC ACID BINDING / TRANSCRIPTION
FACTOR,NULL; UNCHARACTERIZED,NULL,TC72943.path1.1
         (240 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g029590.1 | ARM repeat CCCH-type zinc finger protein | HC ...   278   3e-75
Medtr7g092070.1 | ARM repeat CCCH-type zinc finger protein | HC ...   233   8e-62
Medtr0728s0020.1 | ARM repeat CCCH-type zinc finger protein | HC...   120   1e-27
Medtr1g050438.1 | ARM repeat CCCH-type zinc finger protein | HC ...   120   1e-27
Medtr3g435590.1 | ARM repeat CCCH-type zinc finger protein | HC ...    86   4e-17
Medtr5g082830.1 | ARM repeat CCCH-type zinc finger protein | HC ...    79   4e-15
Medtr5g071070.2 | ARM repeat CCCH-type zinc finger protein | HC ...    67   1e-11
Medtr5g071070.1 | ARM repeat CCCH-type zinc finger protein | HC ...    67   2e-11
Medtr3g435680.1 | zinc finger CCCH domain protein | HC | chr3:11...    65   6e-11

>Medtr3g029590.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr3:9317344-9312889 | 20130731
          Length = 731

 Score =  278 bits (711), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 172/241 (71%), Gaps = 6/241 (2%)

Query: 1   MSRSGWSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHRSAVXXXXXXXXXXXXPI 60
           + RSG  KTLTPSNLDDLF AEI+SSPRYSDPAAASVFSPTH+SAV            PI
Sbjct: 492 VGRSGRPKTLTPSNLDDLFCAEIASSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPI 551

Query: 61  NTNVLSPNNGEHPL-RDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAXXXXXXXXX---X 116
           NTNV+SP N EHPL   +S+G+SSPGRMSPRS+E LSP SSRLSAFA             
Sbjct: 552 NTNVMSPTNVEHPLFHQASYGLSSPGRMSPRSMEALSPMSSRLSAFAQREKQQQQQQQLR 611

Query: 117 XXXXXXXGANNPASIVGSPINSWSKWG-SPTGKVDWSVNGNELGRLQRSSSFELGNNGEE 175
                  GANNP S VGSP+NSWSKWG SP GK DWSVN N+ G+ QRS+SFE GNNGEE
Sbjct: 612 SLSSRELGANNPLSAVGSPVNSWSKWGSSPIGKADWSVNPNDFGQTQRSTSFEHGNNGEE 671

Query: 176 PDLSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLDQHV 235
           PD+ WV SLVKD  PE KEKLA SGPI S +  N N Q + +D+SVL AWLEQ+ LDQ V
Sbjct: 672 PDVGWVHSLVKDPTPEKKEKLAGSGPIPSVEK-NPNPQADGIDHSVLGAWLEQLQLDQLV 730

Query: 236 V 236
           V
Sbjct: 731 V 731


>Medtr7g092070.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr7:36454363-36458250 | 20130731
          Length = 734

 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 167/246 (67%), Gaps = 9/246 (3%)

Query: 1   MSRSGWSKTLTPSNLDDLFSAEISSSPRYSDP-AAASVFSPTHRSAVXXXXXXXXXXXXP 59
           +SRSG  K L PSNLDDLFSAE SSSPRY+DP   ++VFSPTH+SAV            P
Sbjct: 492 LSRSGRMKPLNPSNLDDLFSAE-SSSPRYADPNLTSTVFSPTHKSAVFNQFQQQQNMLSP 550

Query: 60  INTNVLSPNNGEHPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAXXXXXXXXXXXXX 119
           +NTN  S N   H L+ +S+GV   GRMSPR+VEP+SP  SR+S  A             
Sbjct: 551 VNTNFSSKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMGSRMSMLAQRDKQQQFRSLSF 610

Query: 120 XXXXGANNPASIVGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLS 179
               G+N+  +  GS  NSWSKW SP GK+DW+ N +E+G+L+RSSSFELGNNGEEPDLS
Sbjct: 611 REH-GSNSMLATAGSVNNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLS 669

Query: 180 WVQSLVKDTPPEIKEKLA--VSGPI---ASADGLNSNFQMETVDNSVLEAWLEQMHLDQH 234
           WVQSLVK++P EIKEKLA  +SG     +S +G+N + Q+E+VD++VL  WLEQM LD H
Sbjct: 670 WVQSLVKESPTEIKEKLATSISGAAPGGSSGEGMNMSTQLESVDHAVLGTWLEQMQLD-H 728

Query: 235 VVYSQN 240
           +V  QN
Sbjct: 729 LVAQQN 734


>Medtr0728s0020.1 | ARM repeat CCCH-type zinc finger protein | HC |
           scaffold0728:3845-5830 | 20130731
          Length = 626

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 81/140 (57%)

Query: 4   SGWSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHRSAVXXXXXXXXXXXXPINTN 63
           S  SK LTPSNL+DLFSAEI SSPRYSDPA ASVFSP+H+SA             P N N
Sbjct: 466 SCRSKALTPSNLEDLFSAEILSSPRYSDPAMASVFSPSHKSAATNELKQLQHMLSPSNIN 525

Query: 64  VLSPNNGEHPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAXXXXXXXXXXXXXXXXX 123
           +LSP N EH L  +SF V S G MSPR +E +SP S ++SA                   
Sbjct: 526 MLSPKNDEHRLLQASFSVPSCGSMSPRRLEQISPLSPQMSALPHREKQQQQLQSVSSREL 585

Query: 124 GANNPASIVGSPINSWSKWG 143
           G   P+S+VGSP + WS  G
Sbjct: 586 GYKIPSSVVGSPTDPWSYLG 605


>Medtr1g050438.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr1:19408327-19410099 | 20130731
          Length = 590

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 81/140 (57%)

Query: 4   SGWSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHRSAVXXXXXXXXXXXXPINTN 63
           S  SK LTPSNL+DLFSAEI SSPRYSDPA ASVFSP+H+SA             P N N
Sbjct: 450 SCRSKALTPSNLEDLFSAEILSSPRYSDPAMASVFSPSHKSAATNELKQLQHMLSPSNIN 509

Query: 64  VLSPNNGEHPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAXXXXXXXXXXXXXXXXX 123
           +LSP N EH L  +SF V S G MSPR +E +SP S ++SA                   
Sbjct: 510 MLSPKNDEHRLLQASFSVPSCGSMSPRRLEQISPLSPQMSALPHREKQQQQLQSVSSREL 569

Query: 124 GANNPASIVGSPINSWSKWG 143
           G   P+S+VGSP + WS  G
Sbjct: 570 GYKIPSSVVGSPTDPWSYLG 589


>Medtr3g435590.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr3:11689204-11687795 | 20130731
          Length = 469

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 128 PASI-VGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLV 185
           P +I +G  +NSWSKWGS TGK DWSVNGN+ GR  R ++FE GNN EEPD+SWVQSLV
Sbjct: 410 PGTISLGRSVNSWSKWGSRTGKPDWSVNGNDFGRSLRYTTFEHGNNVEEPDISWVQSLV 468


>Medtr5g082830.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr5:35642238-35645468 | 20130731
          Length = 683

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 20/116 (17%)

Query: 127 NPASIVGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFELGNNG---------EEPD 177
           NP+  V S +   S WGSPTGK+DW VNG+EL +L++S+SF   NNG          EPD
Sbjct: 574 NPSCRVSSGL---SDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGPAAPTASQHAEPD 630

Query: 178 LSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLDQ 233
           +SWV SLVKD P +       +  +  A+ +    Q   +   VL  W+EQM+ +Q
Sbjct: 631 VSWVNSLVKDVPSD-------NSGVYGAENMR-QLQQYDLSRDVLPPWVEQMYKEQ 678


>Medtr5g071070.2 | ARM repeat CCCH-type zinc finger protein | HC |
           chr5:30120798-30124106 | 20130731
          Length = 622

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 22/129 (17%)

Query: 124 GANNPASIVGSPIN--SWSKWGSPTGKVDWSVNGNELGRLQRSSSFEL------------ 169
           G  N  S + SP    ++S WGSP G +DW+ +G EL +L++SSSF              
Sbjct: 498 GVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFAFRTTSTPLTPAAA 557

Query: 170 --GNNGEEPDLSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLE 227
               N  EPD+SWV +LVKD  P+   + +V         L  +    T     + AWLE
Sbjct: 558 RAQENDYEPDVSWVNTLVKDATPQESHQFSVED---QKRKLQRHLNNGT---DSIPAWLE 611

Query: 228 QMHLDQHVV 236
           Q+++DQ  +
Sbjct: 612 QLYMDQEQI 620


>Medtr5g071070.1 | ARM repeat CCCH-type zinc finger protein | HC |
           chr5:30120798-30124106 | 20130731
          Length = 704

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 22/129 (17%)

Query: 124 GANNPASIVGSPIN--SWSKWGSPTGKVDWSVNGNELGRLQRSSSFEL------------ 169
           G  N  S + SP    ++S WGSP G +DW+ +G EL +L++SSSF              
Sbjct: 580 GVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFAFRTTSTPLTPAAA 639

Query: 170 --GNNGEEPDLSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLE 227
               N  EPD+SWV +LVKD  P+   + +V         L  +    T     + AWLE
Sbjct: 640 RAQENDYEPDVSWVNTLVKDATPQESHQFSVED---QKRKLQRHLNNGT---DSIPAWLE 693

Query: 228 QMHLDQHVV 236
           Q+++DQ  +
Sbjct: 694 QLYMDQEQI 702


>Medtr3g435680.1 | zinc finger CCCH domain protein | HC |
           chr3:11754602-11753412 | 20130731
          Length = 396

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 6/54 (11%)

Query: 132 VGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLV 185
           V   +NSWS WGS T K DWSVNG++ GR Q       GNN E+PDLSWVQSL+
Sbjct: 348 VSRSVNSWSNWGSRTRKPDWSVNGSDFGRSQH------GNNDEDPDLSWVQSLL 395