Miyakogusa Predicted Gene

Lj3g3v0827190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0827190.1 Non Characterized Hit- tr|I3SFV4|I3SFV4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.95,0,seg,NULL;
DUF1092,Protein of unknown function DUF1092,CUFF.41564.1
         (382 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g030950.1 | PsaB RNA-binding protein | HC | chr3:9831792-9...   491   e-139
Medtr3g030975.1 | PsaB RNA-binding protein | HC | chr3:9844673-9...   304   1e-82
Medtr8g104810.1 | PsaB RNA-binding protein, putative | LC | chr8...   114   2e-25

>Medtr3g030950.1 | PsaB RNA-binding protein | HC |
           chr3:9831792-9837160 | 20130731
          Length = 380

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/378 (66%), Positives = 294/378 (77%), Gaps = 6/378 (1%)

Query: 1   MATLSFNPTRIRTPTFNRSNP--STKLTSSSKPIRIPCIPSSINHSHQKLIHFRANSVSE 58
           MATLSFN TRI+TP+FN +NP  +TKL+SS   I+ P    S N +H   +   + S + 
Sbjct: 1   MATLSFNSTRIKTPSFNYTNPIITTKLSSSKPIIKFPF---SSNKNHFLKLQISSVSETS 57

Query: 59  TSLSTQKXXXXXXXXXXXXXXXPTAEMSFLDPETDPDAISDWELDFCSRPILDARGKKLW 118
           ++ +TQK               PTAE  +LDPE DPD+I  WELDFCSRPILDARGKKLW
Sbjct: 58  STTTTQKDIEEEEEEEEEKED-PTAETCYLDPEADPDSILSWELDFCSRPILDARGKKLW 116

Query: 119 ELVVCDSTLSLQFTKYFPNNVINSITLKDAVVSVCDDLGLPLPKKIRFFRSQMQTIITRA 178
           ELVVCD +LSLQ+TKYFPNNVINSITLKD++V++CDDL LP+P+ IRFFRSQMQTIIT+A
Sbjct: 117 ELVVCDKSLSLQYTKYFPNNVINSITLKDSIVAICDDLDLPVPRNIRFFRSQMQTIITKA 176

Query: 179 CNELGIKPVPSKRCLSLLLWLEERYETVYKKHPGFQKGFTPLLALDNPFPTKLPEDLFGE 238
           C ELGI+ +PSKRCLSLLLWLEERYETVY KHPGFQKG  PLL LDNPF TKLPEDLFGE
Sbjct: 177 CKELGIRALPSKRCLSLLLWLEERYETVYTKHPGFQKGSKPLLPLDNPFATKLPEDLFGE 236

Query: 239 RWAFVQLPFSAVREELTSLQTNTIFGSGLDLDLMGIEIDDKTMIPGLAVGSSRATVLSAI 298
           RWAFVQLP+SAVR E ++ +    +GSGLDLDL+GIEID+KT+IPGLAV SSRA +LSA 
Sbjct: 237 RWAFVQLPYSAVRAEASASEERFGYGSGLDLDLLGIEIDEKTLIPGLAVASSRAKILSAF 296

Query: 299 MNSFELCTVEADTARGSLILSVGISTRYVYATYKKTPTTTSXXXXXXXXXXXCGGLHFLA 358
           MN  ELC++E DTAR +L LSVGISTRYVYATYKK+PT+T             GGLHFLA
Sbjct: 297 MNGLELCSIETDTARSNLTLSVGISTRYVYATYKKSPTSTKEAEAWEAAKKASGGLHFLA 356

Query: 359 IQQDIESEECAGFWLLLD 376
           IQ +++SE+C GFWLLLD
Sbjct: 357 IQDELDSEDCIGFWLLLD 374


>Medtr3g030975.1 | PsaB RNA-binding protein | HC |
           chr3:9844673-9847871 | 20130731
          Length = 212

 Score =  304 bits (778), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 169/206 (82%)

Query: 171 MQTIITRACNELGIKPVPSKRCLSLLLWLEERYETVYKKHPGFQKGFTPLLALDNPFPTK 230
           MQTIIT+AC ELGI+ +PSKRCLSLLLWLEERYETVY KHPGFQKG  PLL LDNPF TK
Sbjct: 1   MQTIITKACKELGIRALPSKRCLSLLLWLEERYETVYTKHPGFQKGSKPLLPLDNPFATK 60

Query: 231 LPEDLFGERWAFVQLPFSAVREELTSLQTNTIFGSGLDLDLMGIEIDDKTMIPGLAVGSS 290
           LPEDLFGERWAFVQLP+SAVR E ++ +    +GSGLDLDL+GIEID+KT+IPGLAV SS
Sbjct: 61  LPEDLFGERWAFVQLPYSAVRAEASASEERFGYGSGLDLDLLGIEIDEKTLIPGLAVASS 120

Query: 291 RATVLSAIMNSFELCTVEADTARGSLILSVGISTRYVYATYKKTPTTTSXXXXXXXXXXX 350
           RA +LSA MN  ELC++E DTAR +L LSVGISTRYVYATYKK+PT+T            
Sbjct: 121 RAKILSAFMNGLELCSIETDTARSNLTLSVGISTRYVYATYKKSPTSTKEAEAWEAAKKA 180

Query: 351 CGGLHFLAIQQDIESEECAGFWLLLD 376
            GGLHFLAIQ +++SE+C GFWLLLD
Sbjct: 181 SGGLHFLAIQDELDSEDCIGFWLLLD 206


>Medtr8g104810.1 | PsaB RNA-binding protein, putative | LC |
           chr8:44150538-44149105 | 20130731
          Length = 107

 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 57/64 (89%)

Query: 104 FCSRPILDARGKKLWELVVCDSTLSLQFTKYFPNNVINSITLKDAVVSVCDDLGLPLPKK 163
           FCSRPILD RGKK+WELVVCD +LSLQ+TKYFPNNV N ITLKD++V++CDDL LPLP+ 
Sbjct: 43  FCSRPILDVRGKKIWELVVCDKSLSLQYTKYFPNNVTNCITLKDSIVAICDDLDLPLPRN 102

Query: 164 IRFF 167
           I FF
Sbjct: 103 ICFF 106