Miyakogusa Predicted Gene

Lj3g3v0826180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0826180.1 tr|G7IWV6|G7IWV6_MEDTR E3 ubiquitin-protein
ligase RNF181 OS=Medicago truncatula GN=MTR_3g031000
PE=,56.45,0.00000000006,ZF_RING_2,Zinc finger, RING-type; no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL;
RING/U-b,CUFF.41562.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g031000.1 | zinc finger, C3HC4 type (RING finger) family p...    57   2e-08

>Medtr3g031000.1 | zinc finger, C3HC4 type (RING finger) family
           protein | LC | chr3:9857076-9858104 | 20130731
          Length = 342

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 126 LVPASVKSIXXXXXXXXXXXXNCAICFEDFHDVGVRMPCLHMFHESCIKTWLHAANSAKI 185
            VPA+   I             CAICFEDF +VGVR+PC HMFH +CI  WL   NS  +
Sbjct: 277 FVPAAKSFIEGLKMVEVEEVEKCAICFEDF-NVGVRIPCSHMFHMTCICDWLVIGNSCPL 335

Query: 186 SK 187
            +
Sbjct: 336 CR 337