Miyakogusa Predicted Gene
- Lj3g3v0826110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0826110.1 tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2
OS=Glycine max GN=Gma.43351 PE=3 SV=1,86.8,0,DNA_topoisoIV,DNA
topoisomerase, type IIA, subunit A/C-terminal; Toprim,Toprim domain;
TOPISMRASEII,,CUFF.41569.1
(857 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g031040.1 | DNA topoisomerase IV subunit A | HC | chr3:987... 1354 0.0
Medtr3g085840.1 | DNA topoisomerase IV subunit A | HC | chr3:388... 1197 0.0
Medtr1g075370.1 | DNA topoisomerase IV | LC | chr1:33373055-3336... 749 0.0
Medtr1g051315.1 | DNA topoisomerase IV | LC | chr1:20097532-2010... 661 0.0
Medtr0756s0010.1 | DNA topoisomerase IV | LC | scaffold0756:6777... 431 e-120
Medtr1g031690.1 | DNA gyrase subunit A | HC | chr1:11104096-1108... 96 2e-19
Medtr2g101930.1 | DNA topoisomerase, putative | LC | chr2:438601... 87 1e-16
Medtr7g089790.1 | DNA gyrase subunit B | HC | chr7:35184228-3517... 84 9e-16
Medtr6g029500.1 | DNA topoisomerase, putative | LC | chr6:101657... 64 5e-10
Medtr6g029520.1 | DNA topoisomerase | LC | chr6:10170084-1016718... 58 4e-08
>Medtr3g031040.1 | DNA topoisomerase IV subunit A | HC |
chr3:9877949-9869222 | 20130731
Length = 1504
Score = 1354 bits (3504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/826 (79%), Positives = 714/826 (86%), Gaps = 6/826 (0%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
V SGI+DTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGG+NSDKCTLILTEG
Sbjct: 391 VEKSGIVDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGKNSDKCTLILTEG 450
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVR+ASNKQ+M+NEEIQNIKKILGLQQNKEY
Sbjct: 451 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVRDASNKQVMENEEIQNIKKILGLQQNKEY 510
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
+NVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRA H N
Sbjct: 511 TNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRASHKN 570
Query: 193 GTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWED 252
GTKLSFYSMPEY++WRE LGN A W IKYYKGLGTSTPQEGREYF+DL KHRKDF+WE+
Sbjct: 571 GTKLSFYSMPEYDAWRERLGNTANAWAIKYYKGLGTSTPQEGREYFKDLDKHRKDFIWEN 630
Query: 253 DYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQRS 312
+ DG+AIE+AFSKKKAEDRK W+R+FEPG RDH A I+YKDFV+KELILFSRADLQRS
Sbjct: 631 ELDGNAIELAFSKKKAEDRKNWMRSFEPGTCRDHEAKLISYKDFVDKELILFSRADLQRS 690
Query: 313 IPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD 372
IPS+VDGLKPGQRKILFCSFKK L KE+KVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD
Sbjct: 691 IPSMVDGLKPGQRKILFCSFKKNLSKEVKVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD 750
Query: 373 FVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNEDGR 432
FVGSNNINLL PNGQFGTRNLGGKDHASSRYIYT+LN +TR LFH +DDKLLEYLNEDGR
Sbjct: 751 FVGSNNINLLTPNGQFGTRNLGGKDHASSRYIYTQLNTVTRSLFHADDDKLLEYLNEDGR 810
Query: 433 SIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWYRG 492
SIEP+WYIPIIPLVLVNGSEGIGTGWSS+IPNYNPR+IIANVRRLLNDE MVPMDPWY+G
Sbjct: 811 SIEPNWYIPIIPLVLVNGSEGIGTGWSSFIPNYNPREIIANVRRLLNDEEMVPMDPWYKG 870
Query: 493 FKGIIEKSAKEGGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPL 552
F+G IEKSAKEGGYIVNG+VEEID+ +FRITELPIRKWTQDYK FLE T+G+PNVKDPL
Sbjct: 871 FRGTIEKSAKEGGYIVNGSVEEIDDITFRITELPIRKWTQDYKTFLELTTEGAPNVKDPL 930
Query: 553 IEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYE 612
IEDF+QNGDDA+VDIE+RMK EK+A IMQEGL KKFKLT+TISTSNMHLFDAEGKIKK++
Sbjct: 931 IEDFKQNGDDAIVDIEVRMKAEKVAAIMQEGLFKKFKLTSTISTSNMHLFDAEGKIKKFD 990
Query: 613 NPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADL 672
PEQILEEF+PLRL+YYE+RK+YIL N ERLLL+LDNKVRFILGVVSGEI+VSNRK+ +L
Sbjct: 991 TPEQILEEFYPLRLEYYEKRKKYILANLERLLLILDNKVRFILGVVSGEIIVSNRKRTEL 1050
Query: 673 LMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKR--GDYEYLL 730
L+EL+QKGFTP+PKKGKSAEPQVAGA GDYEYLL
Sbjct: 1051 LIELKQKGFTPIPKKGKSAEPQVAGANDENSEDQEDSERETASKSVNVEGATWGDYEYLL 1110
Query: 731 SMSIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWMXXXXXXXXXXXXQDGKEAEDE 790
S+SIGTLTLESVQ TPSKS+W+ D EAE+
Sbjct: 1111 SLSIGTLTLESVQKLLDEKADKENEFEILMGTPSKSLWLKDLDELEKKLDELDRIEAEEG 1170
Query: 791 KKRISQASKRTSTRDLGTKAAKKPPQPRKNTKKTK-NAESDNSPME 835
+KR + ++K+ L TK AKKPPQPRKNTKK E+DNS ME
Sbjct: 1171 QKRSTMSNKKNR---LATKPAKKPPQPRKNTKKANVEPENDNSSME 1213
>Medtr3g085840.1 | DNA topoisomerase IV subunit A | HC |
chr3:38841641-38834996 | 20130731
Length = 1345
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/825 (71%), Positives = 664/825 (80%), Gaps = 48/825 (5%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
V SGI+DTLLSWADF +SKD K TDG K QR+RGIV+LEDANDAGGRNS+KCTLILT+G
Sbjct: 368 VEKSGIMDTLLSWADFNESKDFKTTDGRKIQRIRGIVRLEDANDAGGRNSEKCTLILTDG 427
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAKALAMAGLSVVGRDHYGVFPLR KLLNVR AS KQI DN+E Q I+KILGLQQNK+Y
Sbjct: 428 DSAKALAMAGLSVVGRDHYGVFPLRDKLLNVRVASKKQITDNQEFQIIQKILGLQQNKDY 487
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
+NVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSF+VEFTTPIIR HSN
Sbjct: 488 TNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFIVEFTTPIIRVSHSN 547
Query: 193 GTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWED 252
GTKLSFYSM +YE WR+ +GNNA WKIKYYKGLGTST QEGREYF+DL KH K+F+W
Sbjct: 548 GTKLSFYSMSDYEVWRKRIGNNANCWKIKYYKGLGTSTSQEGREYFQDLDKHMKEFIW-- 605
Query: 253 DYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQRS 312
P D A I YK F+++ELILFSRA+LQRS
Sbjct: 606 ---------------------------PSTCHDLEAKLIRYKSFIDRELILFSRAELQRS 638
Query: 313 IPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD 372
IPS+VDGLKPGQRKILFCSFKKKL+KEIKV QFIGYVS HSAYHHGEQSLA+TIIGMAQD
Sbjct: 639 IPSMVDGLKPGQRKILFCSFKKKLYKEIKVSQFIGYVSLHSAYHHGEQSLANTIIGMAQD 698
Query: 373 FVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNEDGR 432
FVG NNINLL PNGQFGTRNLGGKDHAS +YIYTELN +TR LFHE+DDKLL+YLNE+G+
Sbjct: 699 FVGGNNINLLNPNGQFGTRNLGGKDHASPKYIYTELNIVTRFLFHEDDDKLLKYLNEEGK 758
Query: 433 SIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWYRG 492
SIEP+WYIPIIPLVLVNGSE IGTGWSSYIPNYNPR+IIANVRRLLN+E MVPMDPWYRG
Sbjct: 759 SIEPNWYIPIIPLVLVNGSEEIGTGWSSYIPNYNPREIIANVRRLLNEEEMVPMDPWYRG 818
Query: 493 FKGIIEKSAKEGGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPL 552
F+G IEKS K+GGY VNG++ +IDEQ+FRITELPIRKWT+DYKQFLESIT+G+PNV DP
Sbjct: 819 FRGTIEKSMKQGGYRVNGSMVKIDEQTFRITELPIRKWTEDYKQFLESITEGAPNVNDPF 878
Query: 553 IEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYE 612
IEDFRQNGDDA++DIE++MK +K+A +MQ GL KKFKLT+ +STSNMHLFDAEGKIKKY+
Sbjct: 879 IEDFRQNGDDAIIDIEVKMKPDKVASVMQ-GLFKKFKLTSIVSTSNMHLFDAEGKIKKYD 937
Query: 613 NPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADL 672
PEQILEEF+PLR+DYY+RRK+Y+L N ERLLL+LDNKVRFILGVV+GEI++ NRKKA+L
Sbjct: 938 TPEQILEEFYPLRMDYYQRRKKYMLANLERLLLILDNKVRFILGVVNGEIIMINRKKAEL 997
Query: 673 LMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKRGDYEYLLSM 732
L+EL+QKGF+PM +KGKSAEPQV GA GDYEY LS+
Sbjct: 998 LIELKQKGFSPMLRKGKSAEPQVVGANDESSEGATW---------------GDYEYFLSL 1042
Query: 733 SIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWMXXXXXXXXXXXXQDGKEAEDEKK 792
IGTLTLESVQ TP+KS+W+ D KEAE+++K
Sbjct: 1043 PIGTLTLESVQKLLDEKAEKEKEHEVLMGTPTKSLWLKDLDEFEKKLDELDSKEAEEDRK 1102
Query: 793 RISQASKRTSTRDLGTKAAKKPPQPRKNTKKTKNA--ESDNSPME 835
R +QASK+ + K A KPPQPRKNTKKTKN E+DNS ME
Sbjct: 1103 RSNQASKKAAN-GFAAKPAMKPPQPRKNTKKTKNVEPENDNSSME 1146
>Medtr1g075370.1 | DNA topoisomerase IV | LC |
chr1:33373055-33366326 | 20130731
Length = 1000
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/765 (55%), Positives = 506/765 (66%), Gaps = 49/765 (6%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
V S ILD LL FK + DA AG +S KCTLILT+G
Sbjct: 264 VQKSQILDNLLPRIPFKHRTHV------------------DAKLAGRPDSGKCTLILTQG 305
Query: 73 DSAKALAMAGLS-VVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKE 131
K LAM+GLS VV D YGVFPL KLLN S K + +EIQN+ ILGL +NK+
Sbjct: 306 QYVKDLAMSGLSAVVDPDLYGVFPLSSKLLNATRDSRK-LFKKKEIQNLMAILGLVRNKK 364
Query: 132 YSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHS 191
YSN K LRYG LM+MA+QD DG+H KGLLINF +SFWPSLLKV FM FT PII+A S
Sbjct: 365 YSNAKCLRYGQLMVMANQDEDGAHFKGLLINFFYSFWPSLLKVSKFMSVFTFPIIKASDS 424
Query: 192 N-GTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVW 250
G +LSF SM +YE W++ LGN A W+IKY +GL S+ QE REYF+DLGKHR FVW
Sbjct: 425 KKGKELSFDSMQQYEDWKKELGNTANDWEIKYCQGL--SSAQEVREYFQDLGKHRAYFVW 482
Query: 251 EDDYDGSAIEMAFSKKKAEDRKVWIRNFEPG--NYRDHVASRINYKDFVNKELILFSRAD 308
DD D ++I++AFSKK AE+ + WI N +PG NY V INY++FVNKEL+ S +
Sbjct: 483 -DDKDETSIKLAFSKK-AEEWEAWIGNSQPGTCNYERKV---INYRNFVNKELLFSSMKN 537
Query: 309 LQRSIPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIG 368
LQRSIPSVVDGL GQRK LFCSF+ L K+ +V + YV+EHS H+G+QS+ASTIIG
Sbjct: 538 LQRSIPSVVDGLTLGQRKTLFCSFEMNLTKQTEVCRLTAYVTEHSYCHYGQQSIASTIIG 597
Query: 369 MAQDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLN 428
MAQDFVGSNNINLL P GQFGTR+LGGKDHASSR +Y +LN +TR LF +DDKLLEYLN
Sbjct: 598 MAQDFVGSNNINLLIPYGQFGTRDLGGKDHASSRKLYIKLNCVTRLLFPVDDDKLLEYLN 657
Query: 429 EDGRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDP 488
EDGRSI+P+WYIPIIPLVLVNG +GT +SS IP Y+P +II NVRR LN+E MV M P
Sbjct: 658 EDGRSIQPNWYIPIIPLVLVNGCHAMGTCFSSDIPKYHPYEIIKNVRRFLNNEEMVSMKP 717
Query: 489 WYRGFKGIIEKSAKE-GGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPN 547
WY+GF G IEKSAK G Y V+G VE I+EQ+FRI ELPIR WT+DYK+FLE IT
Sbjct: 718 WYKGFGGTIEKSAKGIGYYTVDGLVERINEQTFRIKELPIRMWTEDYKKFLEKITARG-- 775
Query: 548 VKDPLIEDFRQNGDDAMVDIEIRMKLEKIAMIMQ-EGLLKKFKLTTTISTSNMHLFDAEG 606
LIE FRQ GD +V+ ++ +K E+IA I + E L KKF LT TISTSNM+LFDAEG
Sbjct: 776 ----LIESFRQKGDYEIVNFKVNVKQEEIATIEKDEELRKKFNLTCTISTSNMYLFDAEG 831
Query: 607 KIKKYENPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSN 666
KIKKY PEQILEEF LRL YY RRKQY+++NF +LL L K +FI +V+ + N
Sbjct: 832 KIKKYNTPEQILEEFCTLRLKYYVRRKQYLVKNFTQLLRSLRIKQKFISNIVNEKFNPIN 891
Query: 667 RKKADLLMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXX--XXXXXXXXXXXXXKRG 724
R +A+LL+E+ KKGKSAEP VAGA G
Sbjct: 892 R-RAELLIEIL--------KKGKSAEPHVAGAIDYSSKEQEAGEQESVSQSVSIEGATLG 942
Query: 725 DYEYLLSMSIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWM 769
DYEYL S+ TLES++ T MW+
Sbjct: 943 DYEYLSSLPFENFTLESLKKLEAELDEKENELKTLEHTSPDLMWL 987
>Medtr1g051315.1 | DNA topoisomerase IV | LC | chr1:20097532-20106196
| 20130731
Length = 1178
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/780 (49%), Positives = 487/780 (62%), Gaps = 78/780 (10%)
Query: 57 AGGRNSDKCTLILTEGDSAKALAMAGLSV-VGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
AGG KCTLILT G+ A AMAG+S + D YGVFPL KLLNVR++ ++++ +
Sbjct: 357 AGGSERGKCTLILTHGEFA--FAMAGVSAWLDPDLYGVFPLSSKLLNVRDS--RKLLKKK 412
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQ + ILGL +NK+YS+ +SLRYG LMIMA+QD DG+++KGLLINFI+SFWPSLLKV
Sbjct: 413 EIQILMTILGLVRNKKYSDAESLRYGRLMIMANQDEDGAYLKGLLINFIYSFWPSLLKVS 472
Query: 176 SFMVEFTTPIIRAFHS-NGTKLSFYSMPEYESWRENLGNNATG-WKIKYYKGLGTSTPQE 233
FM FT PII+A +S G +LSF SM +YE W ++LGN +T W+I+Y KG + QE
Sbjct: 473 KFMSVFTIPIIKASNSKEGKELSFDSMQQYEDWEKDLGNTSTDDWEIEYCKGF--TAAQE 530
Query: 234 GREYFRDLGKHRKDFVWEDD--YDGSA--IEMAFSKKKAEDRKVWIRN---FEPGNYRDH 286
+EYF+DLG+ R FVW+DD DG++ IE+AFSKK AE+ K W+ N +PG ++
Sbjct: 531 VKEYFQDLGERRAYFVWDDDDEQDGTSTSIELAFSKK-AEEWKAWVCNSQMMQPGTC-NY 588
Query: 287 VASRINYKDFVNKELILFSRADLQRSIPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFI 346
+ I Y+DFVNKEL+ FS +LQR IPS+VDGL GQRK LFCSFK KL K +V +
Sbjct: 589 ESKSIKYRDFVNKELLFFSMKNLQRFIPSMVDGLTLGQRKTLFCSFKMKLTKPTEVFRLT 648
Query: 347 GYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYT 406
YV+ HS +H EQS+ASTIIGMAQDFVGSNNINLL P GQFGTR LGGKDHAS R +
Sbjct: 649 TYVALHSFFHDDEQSIASTIIGMAQDFVGSNNINLLIPYGQFGTRELGGKDHASFRKLCN 708
Query: 407 ELNPITRCLFHENDDKLLEYLNEDGRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYN 466
+LN +TR LF +DDKLLEYLNEDG+S+EP+WYIPIIPLVLVNG +GT +SS IP Y+
Sbjct: 709 KLNCVTRLLFPVDDDKLLEYLNEDGKSVEPNWYIPIIPLVLVNGCHAMGTCFSSDIPKYH 768
Query: 467 PRDIIANVRRLLNDETMVPMDPWYRGFKGIIEKSAKEGGYIVNGTVEEIDEQSFRITELP 526
P +II NVRR LN E MVPM PWYRGF+G I+KSAK GY +NG VE I+EQ+
Sbjct: 769 PCEIIENVRRFLNKEEMVPMKPWYRGFRGTIKKSAK--GYTINGLVERINEQT------- 819
Query: 527 IRKWTQDYKQFLESITDGSPNVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAMIM---QEG 583
FRQ G MVD +++MK EKIA +E
Sbjct: 820 ----------------------------SFRQIGVYEMVDFKVKMKPEKIATTEDEDKEE 851
Query: 584 LLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLDYYERRKQYILENFERL 643
L +KF LT TISTSNM+LFDAEGKI KY +PEQILEEF LR +YY +RK+Y+++NF++L
Sbjct: 852 LRRKFNLTCTISTSNMYLFDAEGKIMKYNSPEQILEEFCRLRQEYYVKRKEYLVKNFKQL 911
Query: 644 LLVLDNKVRFILGVVSGEIVVSNRKKADLLMELQQKGFTPMPKKGKSAEPQVAGAXXXXX 703
L L K FI VV + R A+ L E+ KK KS+EPQVAGA
Sbjct: 912 LRSLKMKQTFITNVVYASCRIYRR--AEFLTEIL--------KKVKSSEPQVAGAIDYGS 961
Query: 704 XXXXXXXXXXXXXXXXXXKRGDYEYLLSMSIGTLTLESVQXXXXXXXXXXXXXXXXXATP 763
GDY+YL S+ + + T ES+ T
Sbjct: 962 EEQKADEQETVATL------GDYKYLSSLPLESFTRESLVKLEAELGEKKKELKTLKDTS 1015
Query: 764 SKSMWMXXXXXXXXXXXXQDGKEAEDEKKRISQASKRTSTRDLGTKAAKKPPQPRKNTKK 823
SMW+ + E+E+ R S KR + + AKK QPRKN +K
Sbjct: 1016 PDSMWLNDLMLFEKEFDKLQKIQTEEERNR-SIMLKRKNDFAID---AKKLSQPRKNNQK 1071
>Medtr0756s0010.1 | DNA topoisomerase IV | LC | scaffold0756:6777-31
| 20130731
Length = 996
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/434 (55%), Positives = 302/434 (69%), Gaps = 25/434 (5%)
Query: 33 DLKKTDGTKTQRLRGIVKLE----DANDAGGRNSDKCTLILTEGDSAKALAMAGLSVVGR 88
D++K++ KT R + L+ DA AGG KCTLILT G+SA AMAG+++V
Sbjct: 570 DVQKSEIAKTLLPRIQIYLKQTHVDAKLAGGPERGKCTLILTLGESA--FAMAGVTLVDP 627
Query: 89 DHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEYSNVKSLRYGHLMIMAD 148
D YGVFPL KLLNVR++ ++++ +EIQ + ILGL +NK+YS+ +SLRYG LMIMA
Sbjct: 628 DLYGVFPLSSKLLNVRDS--RKLLKKKEIQILMTILGLVRNKKYSDAESLRYGRLMIMAY 685
Query: 149 QDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFH-SNGTKLSFYSMPEYESW 207
QD DG+ +KGLLINFI+SFWPSLLKV FM FT PI++A G +LSF SM +YE W
Sbjct: 686 QDEDGAQLKGLLINFIYSFWPSLLKVSKFMSVFTFPIMKASDLKKGKELSFDSMQQYEDW 745
Query: 208 RENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWEDD--YDGSA--IEMAF 263
+ LGN A W I Y KG S +E REYF+DLG+ R FVW+DD DG++ IE+AF
Sbjct: 746 IKELGNTANDWDINYCKGF--SAAREVREYFQDLGERRAYFVWDDDDEQDGTSTSIELAF 803
Query: 264 SKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQRSIPSVVDGLKPG 323
SKK AE+ W+ N +PG ++ + I Y+DFVNKEL+ FS +LQ SIPS+VDGL G
Sbjct: 804 SKK-AEEWMAWVCNSQPGTC-NYESKSIKYRDFVNKELLFFSMKNLQGSIPSMVDGLTLG 861
Query: 324 QRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHG--EQSLASTIIGMAQDFVGSNNINL 381
QRK LF SFK L K +V + YV++HS H EQS+ASTIIGMAQDFVGSNNINL
Sbjct: 862 QRKTLFTSFKMNLTKPTEVFRLTAYVNQHSDCHGDGDEQSIASTIIGMAQDFVGSNNINL 921
Query: 382 LKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNEDGRSIEPSWY-- 439
L P GQFGTR+LGGKDHAS R + T LN +TR LF +DDKLLEYLNE+G SIEP+WY
Sbjct: 922 LVPYGQFGTRDLGGKDHASFRKLCTNLNCVTRLLFPVDDDKLLEYLNENGNSIEPNWYFV 981
Query: 440 ----IPIIPLVLVN 449
+ I +V++N
Sbjct: 982 SPFFVMAILVVIIN 995
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 112/256 (43%), Gaps = 49/256 (19%)
Query: 571 MKLEKIAMIM---QEGLLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLD 627
MK EKIA +E L +KF LT T+STSNM+LFDAEGKI KY +PEQ LEEF LR +
Sbjct: 1 MKPEKIATTEDEDKEELRRKFNLTCTVSTSNMYLFDAEGKIMKYNSPEQTLEEFCRLRQE 60
Query: 628 YYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADLLMELQQKGFTPMPKK 687
YY +RK+Y+++NF++LL L K FI VV + + A+ L E+ KK
Sbjct: 61 YYVKRKEYLVKNFKQLLRSLKMKRTFITNVVYASCRI--YRIAEFLTEIL--------KK 110
Query: 688 GKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKRGDYEYLLSMSIGTLTLESVQXXXX 747
K A+ Q A GDYEYL S+ + T ES+
Sbjct: 111 EKQADEQETVATL-----------------------GDYEYLSSLPLDNFTRESLVKLQA 147
Query: 748 XXXXXXXXXXXXXATPSKSMWMXXXXXXXXXXXXQDGKEAEDEKKRISQASKRTSTRDLG 807
T SMW+ + E E+ R K+ S
Sbjct: 148 ELDEKQKELKTLKDTSPDSMWLNDLMLFEKEFDKLQKIQTEKERYRSIMVKKKLS----- 202
Query: 808 TKAAKKPPQPRKNTKK 823
QPRKN +K
Sbjct: 203 --------QPRKNNQK 210
>Medtr1g031690.1 | DNA gyrase subunit A | HC |
chr1:11104096-11086066 | 20130731
Length = 938
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 188/422 (44%), Gaps = 64/422 (15%)
Query: 309 LQRSIPSVVDGLKPGQRKILFCSFK-----KKLFKEIK--VGQFIGYVSEHSAYH-HGEQ 360
L R++P V DGLKP R+ILF + KK FK+ VG+ +G +H HG+
Sbjct: 116 LGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLG------KFHPHGDT 169
Query: 361 SLASTIIGMAQDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRC-LFHEN 419
++ +++ MAQDF S L+ +G FG+ + A+ RY L + + +
Sbjct: 170 AVYDSMVRMAQDF--SLRSPLVNGHGNFGS--IDADPPAAMRYTECRLEELAEAVMLADL 225
Query: 420 DDKLLEYL-NEDGRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLL 478
D ++++ N D EPS +P +L+NGS GI G ++ IP +N +++ +R ++
Sbjct: 226 DQDTVDFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEVVDVLRVMI 285
Query: 479 -NDETMV------------PMDPWYRGFKGIIEK-SAKEGGYIVNGT--VEEIDEQSFR- 521
N E + P G GI+E G +V G VE +D +S R
Sbjct: 286 HNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRVVVRGKTDVELLDSKSKRS 345
Query: 522 ---ITELPIRKWTQDYKQFLESITDGSPNVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAM 578
I E+P + + +E I D N I D R D + + + I +K +
Sbjct: 346 AIIIKEIP---YQTNKSALVEKIADLVENKSLDGISDIRDESDRSGMRVVIELKRGSDPL 402
Query: 579 IMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLDYYERRKQYILE 638
I+ L + L +T S + + + + GK K+ ++IL+ F R ERR ++ L
Sbjct: 403 IVLNNLYRLTSLQSTFSCNMVGILN--GKPKQM-GLKEILQAFLDFRCSVVERRARFQLS 459
Query: 639 NFERL------LLV----LDNKVRFILGVVSGEIVVS--------NRKKADLLMELQQKG 680
++ +LV LD +R I S I + + K+A+ L+++ +
Sbjct: 460 KAQQRRHIVEGILVGFDNLDGVIRIIREASSNSIAAAGLQNEFNISEKQAEALLDMSLRR 519
Query: 681 FT 682
T
Sbjct: 520 LT 521
>Medtr2g101930.1 | DNA topoisomerase, putative | LC |
chr2:43860174-43861191 | 20130731
Length = 107
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 43/137 (31%)
Query: 146 MADQDHDGSHIKGLLINFIHSFWPSLLKVPS---FMVEFTTPIIRAFHSNGTKLSFYSMP 202
M DHDG HIK LLIN I+ W SLL + F+ EF TPIIR
Sbjct: 1 MIRSDHDGCHIKWLLINLIYKCWSSLLMLKDPQPFIAEFVTPIIR--------------- 45
Query: 203 EYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWEDDYDGSAIEMA 262
GLG+ST EG EYF +K+F+WE++ D AI++A
Sbjct: 46 ----------------------GLGSSTALEGTEYF---CHSQKNFIWENEDDEKAIDLA 80
Query: 263 FSKKKAEDRKVWIRNFE 279
F K+K+++ ++WI+NF+
Sbjct: 81 FGKEKSDEERIWIKNFQ 97
>Medtr7g089790.1 | DNA gyrase subunit B | HC |
chr7:35184228-35173250 | 20130731
Length = 726
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 9/224 (4%)
Query: 56 DAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
D N + C + + EGDSA A G R + PLRGK+LN+ + NE
Sbjct: 498 DCSSSNPEDCEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNIERRDEAAMYKNE 554
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQN+ LGL E +LRY ++I+ D D DG+HI+ LL+ F + + +L
Sbjct: 555 EIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFD-E 613
Query: 176 SFMVEFTTPIIRAFHSNGTKLSF-YSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEG 234
++ P+ + + G ++ + Y + + + + NA+ + ++ +KGLG P +
Sbjct: 614 GYIYVGVPPLYKV--TRGKQVHYCYDEADLKKLKSSFAPNAS-YNMQRFKGLGEMMPLQL 670
Query: 235 REYFRDLGKH-RKDFVWEDDYDGSAIEMAFSKKKAEDRKVWIRN 277
E D + K ED + + + + + + RK I+N
Sbjct: 671 WETTMDPEQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIQN 714
>Medtr6g029500.1 | DNA topoisomerase, putative | LC |
chr6:10165773-10165096 | 20130731
Length = 123
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 34/152 (22%)
Query: 44 RLRGIVKLEDANDAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNV 103
R+ I+ + DA G + CTLILT+G+S K++
Sbjct: 4 RVDEILGMMDACHEKGYH---CTLILTKGNSTKSIV------------------------ 36
Query: 104 REASNKQIMDNEEIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINF 163
S + + N+ + N+ +IL L E SLRY ++IM D D D +HIKGL++
Sbjct: 37 ---SKLEDLKNKIVNNLMQILDLTFKSEKF---SLRYDKIIIMTDADFDETHIKGLILYL 90
Query: 164 IHSFW-PSLLKVPSFMVEFTTPIIRAFHSNGT 194
I+ W P ++ + F+ TPII+A S+G+
Sbjct: 91 IYIMWTPLIMNMSEFLSTMNTPIIKATSSSGS 122
>Medtr6g029520.1 | DNA topoisomerase | LC | chr6:10170084-10167186 |
20130731
Length = 100
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 138 LRYGHLMIMADQDHDGSHIKGLLINFIHSFW-PSLLKVPSFMVEFTTPIIRAFHSNGTKL 196
LRYG ++I+A+ D DG H+KGL++ I+ W P ++ F+ T II+AF + G+
Sbjct: 15 LRYGKIIIIANADFDGIHMKGLILYLIYKMWIPIVMNRSKFLSTINTLIIKAFTTLGS-- 72
Query: 197 SFYSMPEYESWRENLGNNATGWKIKYYK 224
+E ++ + + +GWKIKYYK
Sbjct: 73 -------FEELKKKV--DLSGWKIKYYK 91