Miyakogusa Predicted Gene
- Lj3g3v0824890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0824890.1 Non Characterized Hit- tr|C5X1A9|C5X1A9_SORBI
Putative uncharacterized protein Sb01g008660
OS=Sorghu,32.22,1e-18,UPF0114,Uncharacterised protein family UPF0114;
seg,NULL; FAMILY NOT NAMED,NULL,CUFF.41520.1
(282 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g068770.1 | structural constituent of ribosome protein | H... 372 e-103
Medtr5g025750.1 | transmembrane protein, putative | HC | chr5:10... 132 4e-31
Medtr3g032820.1 | transmembrane protein, putative | HC | chr3:10... 128 7e-30
Medtr4g082590.1 | transmembrane protein, putative | HC | chr4:32... 109 4e-24
Medtr3g032210.1 | transmembrane protein, putative | LC | chr3:10... 99 4e-21
Medtr3g032770.1 | transmembrane protein, putative | LC | chr3:10... 97 2e-20
Medtr3g032170.1 | hypothetical protein | HC | chr3:10100496-1010... 88 7e-18
Medtr3g032217.1 | structural constituent of ribosome protein | H... 76 4e-14
Medtr3g032100.1 | transmembrane protein, putative | LC | chr3:10... 68 1e-11
Medtr3g032405.1 | hypothetical protein | LC | chr3:10221306-1022... 55 1e-07
Medtr3g032390.1 | hypothetical protein | HC | chr3:10205837-1021... 54 1e-07
Medtr3g032390.4 | hypothetical protein | HC | chr3:10206641-1021... 54 1e-07
Medtr3g032390.3 | hypothetical protein | HC | chr3:10212466-1021... 54 1e-07
Medtr3g032390.2 | hypothetical protein | HC | chr3:10211947-1021... 54 1e-07
Medtr3g032810.1 | structural constituent of ribosome protein, pu... 54 2e-07
Medtr3g033130.1 | NB-ARC domain disease resistance protein, puta... 50 2e-06
>Medtr4g068770.1 | structural constituent of ribosome protein | HC |
chr4:25791585-25794189 | 20130731
Length = 262
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/282 (68%), Positives = 208/282 (73%), Gaps = 20/282 (7%)
Query: 1 MALSCYTFISASPPSLSLQSHRPSHLPRRVFYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MALSC+TFI+ S P SL +R SHLP RV +
Sbjct: 1 MALSCHTFITPSTP-YSLHINRSSHLPHRVSFTKASLSSSSSDSKAPSPPQS-------- 51
Query: 61 XXXXXXXXXXFVESRPPDPAFNYAYANTNGSPIVRMVRATESSIERIIFDFRFXXXXXXX 120
V SRP +PAFNYA+ NTNG+P+VRMV+ TESSIER+IFDFRF
Sbjct: 52 -----------VPSRPTEPAFNYAFNNTNGNPLVRMVQNTESSIERVIFDFRFLALLAVG 100
Query: 121 XXXXXXXXCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMG 180
CFLNGC+YI +AYKVYWT CVKGVH+GKMVL LVEAIDVYLAGTVMLIFGMG
Sbjct: 101 GSLAGSLLCFLNGCVYIVEAYKVYWTSCVKGVHTGKMVLLLVEAIDVYLAGTVMLIFGMG 160
Query: 181 LYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILL 240
LYGLFISNTP DV P+VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILL
Sbjct: 161 LYGLFISNTPHDVQPAVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILL 220
Query: 241 VKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282
VKMFERSK+V I+TGLDLLSYSVCIFLSSASLYILHNLHK D
Sbjct: 221 VKMFERSKLVVIATGLDLLSYSVCIFLSSASLYILHNLHKQD 262
>Medtr5g025750.1 | transmembrane protein, putative | HC |
chr5:10503071-10498640 | 20130731
Length = 267
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 105/174 (60%), Gaps = 16/174 (9%)
Query: 97 VRATESSIERIIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIFDAYKVYWTCCVKGVHSGK 156
+ E IE++I+ RF CF+ G ++ +++ Y V+ K
Sbjct: 88 LEGIEEGIEKVIYRCRFLAIIGVFGSLIGSILCFIKGSTFVAESFLGYL------VNRSK 141
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN-----TPPDVPPSVDRALKGSSLFGMFA 211
++ L+EA+D+YL GTVML+FGMGLY LF+SN + D PS DR S+LFG+F
Sbjct: 142 VIQMLIEALDLYLLGTVMLVFGMGLYELFVSNLDSASSLQDQKPS-DR----SNLFGIFT 196
Query: 212 LKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCI 265
LKERPKW+ I ++++LKTKVGHVIVM+LL+ + +RSK I T +DLL + +
Sbjct: 197 LKERPKWLDIKTVNDLKTKVGHVIVMLLLIGLIDRSKKATIQTPVDLLCFCAAV 250
>Medtr3g032820.1 | transmembrane protein, putative | HC |
chr3:10378514-10377855 | 20130731
Length = 146
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 73/106 (68%), Gaps = 26/106 (24%)
Query: 134 CIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAI--------------------------DV 167
C+YI D YKVYW+ VKGVH+GKMVL LVEAI +V
Sbjct: 33 CVYIVDTYKVYWSSGVKGVHAGKMVLHLVEAIGKNIILHHYLNKEHENNFFLFLFSFGNV 92
Query: 168 YLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALK 213
YLAGTVMLIFG+GLYGLFISNTP D+ PSVDRALKGSSLFGMFALK
Sbjct: 93 YLAGTVMLIFGLGLYGLFISNTPHDMSPSVDRALKGSSLFGMFALK 138
>Medtr4g082590.1 | transmembrane protein, putative | HC |
chr4:32119330-32121070 | 20130731
Length = 292
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 104 IERIIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVE 163
IE+ I D RF CFL GC+ + +Y Y + ++ G +V L+E
Sbjct: 123 IEKAIMDCRFFTLFAVAGSLLGSVLCFLEGCVLVIKSYAHYLHMLSQPLNQGHLVHLLIE 182
Query: 164 AIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISS 223
AID++L GT +L+FG+GLY +F+ + + + + S L ++ +K P+W+ + S
Sbjct: 183 AIDMFLVGTALLMFGVGLYVMFVGSW------TTGKQKESSGL--LYIMKSPPRWVGMQS 234
Query: 224 LDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHK 280
+++ K+K+GH ++MIL V + E+ + + TGLDL ++ + SSA++++L L++
Sbjct: 235 IEQAKSKIGHAVMMILQVGLIEKFNDIPMVTGLDLACFAAALLTSSATIFVLSKLNQ 291
>Medtr3g032210.1 | transmembrane protein, putative | LC |
chr3:10133083-10134432 | 20130731
Length = 197
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)
Query: 133 GCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPD 192
GC+ AYKVYW+ CVKGVH+G MVLRLVEAIDVYLAGT+MLIFGM YGLFISNTP D
Sbjct: 92 GCVL---AYKVYWSSCVKGVHTGNMVLRLVEAIDVYLAGTIMLIFGMFFYGLFISNTPHD 148
Query: 193 V 193
+
Sbjct: 149 M 149
>Medtr3g032770.1 | transmembrane protein, putative | LC |
chr3:10366302-10365353 | 20130731
Length = 107
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/58 (79%), Positives = 50/58 (86%), Gaps = 2/58 (3%)
Query: 133 GCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAI--DVYLAGTVMLIFGMGLYGLFISN 188
GC+YI DAYKVYW+ CVKGVH+GKMVLRLVEA+ DVYLAGTVMLIFGMGLY SN
Sbjct: 7 GCVYIVDAYKVYWSSCVKGVHTGKMVLRLVEAVAADVYLAGTVMLIFGMGLYETLFSN 64
>Medtr3g032170.1 | hypothetical protein | HC |
chr3:10100496-10102670 | 20130731
Length = 99
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 57/85 (67%), Gaps = 13/85 (15%)
Query: 129 CFLN-GCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFIS 187
CF + G + + AYKVYW+ CVKGVHSGKMVL V+AIDVYL M YGLFIS
Sbjct: 17 CFNHRGAMLLHRAYKVYWSSCVKGVHSGKMVLPQVDAIDVYLECVYM-------YGLFIS 69
Query: 188 NTPPDVPPSVDRALKGSSLFGMFAL 212
N P D+ PSVDR SLFGMFAL
Sbjct: 70 NAPHDMSPSVDR-----SLFGMFAL 89
>Medtr3g032217.1 | structural constituent of ribosome protein | HC |
chr3:10136508-10136895 | 20130731
Length = 54
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRA 200
MVLRLVEAIDVYLAGTVMLIFGM +YGLFI+N P D+ PSVDRA
Sbjct: 1 MVLRLVEAIDVYLAGTVMLIFGMRIYGLFITNAPHDMSPSVDRA 44
>Medtr3g032100.1 | transmembrane protein, putative | LC |
chr3:10075089-10075409 | 20130731
Length = 71
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 164 AIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISS 223
+ VYLAGTVMLIF MGLYGLFISN P D+ SVDR+LKGSSL+ + R ++ +
Sbjct: 2 VLHVYLAGTVMLIFIMGLYGLFISNIPHDISRSVDRSLKGSSLWNVCFEGNRKPYIHVGG 61
>Medtr3g032405.1 | hypothetical protein | LC |
chr3:10221306-10221638 | 20130731
Length = 54
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 31/44 (70%), Gaps = 9/44 (20%)
Query: 167 VYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMF 210
VYLA T+ML FI+NTP DV SVDRALKGSSLFGMF
Sbjct: 8 VYLASTLML---------FINNTPHDVSASVDRALKGSSLFGMF 42
>Medtr3g032390.1 | hypothetical protein | HC |
chr3:10205837-10213593 | 20130731
Length = 54
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 36/56 (64%), Gaps = 12/56 (21%)
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFAL 212
MVL LVEAIDVYL M YGLFISN P D+ PSVDR SLFGMFAL
Sbjct: 1 MVLPLVEAIDVYLECVYM-------YGLFISNAPHDMSPSVDR-----SLFGMFAL 44
>Medtr3g032390.4 | hypothetical protein | HC |
chr3:10206641-10213593 | 20130731
Length = 54
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 36/56 (64%), Gaps = 12/56 (21%)
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFAL 212
MVL LVEAIDVYL M YGLFISN P D+ PSVDR SLFGMFAL
Sbjct: 1 MVLPLVEAIDVYLECVYM-------YGLFISNAPHDMSPSVDR-----SLFGMFAL 44
>Medtr3g032390.3 | hypothetical protein | HC |
chr3:10212466-10213593 | 20130731
Length = 54
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 36/56 (64%), Gaps = 12/56 (21%)
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFAL 212
MVL LVEAIDVYL M YGLFISN P D+ PSVDR SLFGMFAL
Sbjct: 1 MVLPLVEAIDVYLECVYM-------YGLFISNAPHDMSPSVDR-----SLFGMFAL 44
>Medtr3g032390.2 | hypothetical protein | HC |
chr3:10211947-10213593 | 20130731
Length = 54
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 36/56 (64%), Gaps = 12/56 (21%)
Query: 157 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFAL 212
MVL LVEAIDVYL M YGLFISN P D+ PSVDR SLFGMFAL
Sbjct: 1 MVLPLVEAIDVYLECVYM-------YGLFISNAPHDMSPSVDR-----SLFGMFAL 44
>Medtr3g032810.1 | structural constituent of ribosome protein,
putative | LC | chr3:10377683-10377531 | 20130731
Length = 50
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 237 MILLVKMFERSKMVAISTGLDLLSYSVCIFLS 268
MILLVK+FERSK I+TGLDLL YSVCIFLS
Sbjct: 1 MILLVKIFERSKTAVIATGLDLLGYSVCIFLS 32
>Medtr3g033130.1 | NB-ARC domain disease resistance protein, putative
| LC | chr3:10526729-10532558 | 20130731
Length = 1264
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 213 KERP-KWMKISSLDELKTKVGHVIVMILLVKMF 244
+ERP KW+KI S+DELKTKV HV++MILLV +F
Sbjct: 1232 QERPNKWIKIRSIDELKTKVRHVVIMILLVNLF 1264