Miyakogusa Predicted Gene
- Lj3g3v0824800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0824800.1 tr|A9RY09|A9RY09_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,33.89,6e-19,DUF3411,Protein of unknown function DUF3411;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.41517.1
(277 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g033620.1 | DUF3411 domain protein | HC | chr3:10797573-10... 322 2e-88
Medtr0013s0150.1 | DUF3411 domain protein | HC | scaffold0013:61... 251 5e-67
Medtr4g077000.1 | DUF3411 domain protein | HC | chr4:29504926-29... 215 4e-56
Medtr3g071970.1 | DUF399 family protein | HC | chr3:32330169-323... 102 6e-22
Medtr2g084605.1 | plant/K8E10-2 protein | HC | chr2:35808965-358... 59 3e-09
>Medtr3g033620.1 | DUF3411 domain protein | HC |
chr3:10797573-10794263 | 20130731
Length = 391
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/275 (63%), Positives = 195/275 (70%), Gaps = 14/275 (5%)
Query: 1 MAMACFSNLSTHLCSLQTHSQRNFYDFSHSSLPSYTITSL-------------KFCSAPI 47
MAMA FSN+STHL + TH+Q FY +SHSSLPSY IT+ SAPI
Sbjct: 1 MAMASFSNISTHLFTHHTHTQTKFYHYSHSSLPSYIITARHEVFTLFSSKLNHSSASAPI 60
Query: 48 FTPPHLLHSPATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLVLAEAG 107
F P HL+HSP + AMLVLAE G
Sbjct: 61 FMPNHLIHSPVST-SFSAGNGGGFPGSGGGGGGGDDGGGGEEEERDRNREEAMLVLAEVG 119
Query: 108 KSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLMKFGGFKERLLGDDLFLTKLI 167
+S+E+FP DLA AV AGRVPG IVRR+F+LEES VFRWL+KFGGFKERLL DDLFLTKL+
Sbjct: 120 RSMESFPVDLAVAVKAGRVPGSIVRRFFELEESVVFRWLLKFGGFKERLLADDLFLTKLV 179
Query: 168 MECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPILSLKPPLAVS 227
MEC VVIFTKAAAEL++RKE F+KE+DFVVANVVTGIVTGFVLVWFPAP +SLKPP A+S
Sbjct: 180 MECVVVIFTKAAAELKKRKENFSKEMDFVVANVVTGIVTGFVLVWFPAPTVSLKPPPAIS 239
Query: 228 AGPIAKLFYGCPENAFQVALAGTSYTILQRIGAIV 262
AG IAK FYGCPENAFQVALAGTSYT+LQRIGAIV
Sbjct: 240 AGIIAKFFYGCPENAFQVALAGTSYTLLQRIGAIV 274
>Medtr0013s0150.1 | DUF3411 domain protein | HC |
scaffold0013:61141-55942 | 20130731
Length = 381
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/164 (72%), Positives = 140/164 (85%)
Query: 99 AMLVLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLMKFGGFKERLLG 158
A+LVL E GKSLE+ PADLA AV AGRVPG IV+R+F+L++S+VFRWL+ FGGF+ERLL
Sbjct: 99 ALLVLTEVGKSLESLPADLAEAVKAGRVPGSIVKRFFELQKSSVFRWLLNFGGFRERLLA 158
Query: 159 DDLFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPIL 218
DDLFL K+ MEC V IFTK AAELE+RKE FTKELDFV A+VV IV F+LVW PAP +
Sbjct: 159 DDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWLPAPTV 218
Query: 219 SLKPPLAVSAGPIAKLFYGCPENAFQVALAGTSYTILQRIGAIV 262
SL+PP +VSAG IAK F+GCPENAFQVALAGTSY+++QRIGAIV
Sbjct: 219 SLRPPPSVSAGLIAKFFFGCPENAFQVALAGTSYSLIQRIGAIV 262
>Medtr4g077000.1 | DUF3411 domain protein | HC |
chr4:29504926-29500379 | 20130731
Length = 388
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 130/164 (79%)
Query: 99 AMLVLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLMKFGGFKERLLG 158
A+L+LA+AG+SLE+ PADLA+A+ G++P +V R+ +LE+S RWL++FGGFKERLL
Sbjct: 110 ALLLLAQAGRSLESVPADLASAIKEGKIPASVVARFLELEKSPFMRWLLQFGGFKERLLA 169
Query: 159 DDLFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPIL 218
DDLFL K+ EC V +FTK AAE +RR+EKF EL+ V A+VV I+ F+LV+ PAP +
Sbjct: 170 DDLFLAKVGFECGVGVFTKTAAEYDRRREKFFDELEIVFADVVMAIIADFMLVYLPAPTV 229
Query: 219 SLKPPLAVSAGPIAKLFYGCPENAFQVALAGTSYTILQRIGAIV 262
SL+PPL VSAG I K F+ CP+NAFQVAL+G+SY+ LQR+GAIV
Sbjct: 230 SLRPPLGVSAGAITKFFHNCPDNAFQVALSGSSYSFLQRVGAIV 273
>Medtr3g071970.1 | DUF399 family protein | HC |
chr3:32330169-32336859 | 20130731
Length = 780
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 102 VLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLM-KFGGFKERLLGDD 160
V+ AG+ + P DL + G V +++ +F LE+ + L +F GF+ERLL D
Sbjct: 434 VMNAAGQRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLLSELTHRFQGFRERLLADP 493
Query: 161 LFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPILSL 220
FL +L +E + + T A+ ++RKE F +ELD+V+ + V G V F VW PAP LS
Sbjct: 494 KFLQRLAIEEGISVTTTLLAQYQKRKENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSF 553
Query: 221 KPPLAVSAGP-----IAKLFYGCPENAFQVALAGTSYTILQRIGAIV 262
+ P + L P+NAFQ GT++ + RI ++V
Sbjct: 554 LSYADETIAPDNISSLIGLLGSIPDNAFQKNPVGTNWNLNHRIASVV 600
>Medtr2g084605.1 | plant/K8E10-2 protein | HC |
chr2:35808965-35814582 | 20130731
Length = 392
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 102 VLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLMKF-----GGFKERL 156
V+ EA P+D+ A + + + RY +L+ SA W + F + R+
Sbjct: 114 VMKEAEARGVKLPSDMEEAARVTGIREMFLLRYLELQGSA---WPLSFLMKNCSMLRNRM 170
Query: 157 LGDDLFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAP 216
L D FL K+ E + AE+++R + F E + A+++ G+ LV AP
Sbjct: 171 LADPSFLFKVGTEIVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVAVDIALVGLLAP 230
Query: 217 ILSLKPPLAVSAGPIAKLFYGC---PENAFQVALAGTSYTILQRI 258
+ P A+S G + ++ + C P + F+ G ++ +QRI
Sbjct: 231 YARIGKP-ALSKGLLGRIQHACAALPSSVFEAERPGCKFSAMQRI 274