Miyakogusa Predicted Gene

Lj3g3v0824610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0824610.1 tr|B9MT90|B9MT90_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_739338 PE=4
SV=1,75.89,1.99965e-42,DnaJ,Heat shock protein DnaJ, N-terminal; no
description,Heat shock protein DnaJ, N-terminal; UNCHAR,CUFF.41496.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g117745.1 | import inner membrane translocase subunit TIM1...   143   5e-35
Medtr1g066810.1 | import inner membrane translocase subunit TIM1...   123   3e-29

>Medtr7g117745.1 | import inner membrane translocase subunit TIM14 |
           HC | chr7:48905639-48901605 | 20130731
          Length = 110

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 81/110 (73%), Gaps = 3/110 (2%)

Query: 1   MATPLMXXXXXXXXXXXXXXXXXXWHNLRNLP---KKFYEGGFQATMTRREAALILGVRE 57
           MA+PL+                  W   +  P   +KFYEGGFQ TMT+REAALILGVR+
Sbjct: 1   MASPLIAGIAVAAAAYAGKYGIQAWQAFKARPPALRKFYEGGFQPTMTKREAALILGVRQ 60

Query: 58  RTPTDKIKEAHKRVMIANHPDAGGSHYLASKINEAKDMLLGKPKGGGSAF 107
            TPTDKIKEAH+RVM+ANHPDAGGSHYLASKINEAKDM++GK KGGGSAF
Sbjct: 61  TTPTDKIKEAHRRVMVANHPDAGGSHYLASKINEAKDMMIGKTKGGGSAF 110


>Medtr1g066810.1 | import inner membrane translocase subunit TIM14 |
           HC | chr1:28712886-28715421 | 20130731
          Length = 110

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 73/110 (66%), Gaps = 3/110 (2%)

Query: 1   MATPLMXXXXXXXXXXXXXXXXXXWHNLRNLP---KKFYEGGFQATMTRREAALILGVRE 57
           M TPL+                  W      P   +KFYEGGF+A M +REAA ILGVR 
Sbjct: 1   METPLISGIAVAAAAYAARYSIQTWQAFMARPAGMRKFYEGGFKAIMDKREAARILGVRP 60

Query: 58  RTPTDKIKEAHKRVMIANHPDAGGSHYLASKINEAKDMLLGKPKGGGSAF 107
             P  KIKEAH+R+M+ANHPDAGGSH++ASKINEAKDMLLGK KGGGSAF
Sbjct: 61  TVPIVKIKEAHRRMMVANHPDAGGSHHVASKINEAKDMLLGKTKGGGSAF 110