Miyakogusa Predicted Gene

Lj3g3v0821280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0821280.1 tr|G7J1L2|G7J1L2_MEDTR Crossover junction
endonuclease MUS81 OS=Medicago truncatula GN=MTR_3g022850
,73.01,0,CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81,NULL;
seg,NULL; ERCC4 domain,ERCC4 domain; ERCC4,ERCC,CUFF.41470.1
         (664 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g022850.1 | crossover junction endonuclease MUS81-like pro...  1074   0.0  

>Medtr3g022850.1 | crossover junction endonuclease MUS81-like
           protein | HC | chr3:6876038-6866010 | 20130731
          Length = 659

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/665 (78%), Positives = 573/665 (86%), Gaps = 8/665 (1%)

Query: 1   MENRARVRCPENQELCSYMWNKWKEMAE--KGVSDNIEMALSKAHSNVCNSKNPILTIKD 58
           MENR RVRCPEN+EL ++M NKWKEMAE  KG+S+NIEMALSKAH NVCNSKNPI TIKD
Sbjct: 1   MENRTRVRCPENEELATFMKNKWKEMAESPKGLSENIEMALSKAHFNVCNSKNPIRTIKD 60

Query: 59  FAQVKGVGKMILKLMQGFFGTGSGGPEPEDLXXXXXXXXXXXRYVPQRNSVAYALLITLY 118
           F+ VKGVGKM+L+LMQGFFGT SGG EP+D            RY+PQRNSVAYALLITLY
Sbjct: 61  FSTVKGVGKMMLRLMQGFFGTASGGTEPDDSTKKGKKTKGTKRYMPQRNSVAYALLITLY 120

Query: 119 RGTSSGNEFMRKQELIDAAEASGLSRVPIAPELGKGKPGRFGSSPKEWYSGWNCMKTLIA 178
           RGTS+GNEFMRKQELIDAAEASGLSR PIA E GKGK G FGSSP++WYSGW+CMKTLI+
Sbjct: 121 RGTSNGNEFMRKQELIDAAEASGLSRAPIASEKGKGKAGHFGSSPQDWYSGWSCMKTLIS 180

Query: 179 KGLVVKSSCPAKYMLTQEGKEAASDCLSRSGMTESLEKSASVENPLHMDKENSLDMEPDS 238
           KGLVVKSSCPAKYMLT+EGKEAA DCL RSGM ESL+KSASVE  +HMDK+NSLD+E  +
Sbjct: 181 KGLVVKSSCPAKYMLTEEGKEAACDCLKRSGMAESLDKSASVEISVHMDKQNSLDIEVSA 240

Query: 239 HDMEPEVMSPLTQRKKPIDVPLDSLERFTNMGYSKEQIVAAFTDVSGRHPNKDVSSLWPA 298
           +D+E EV SPL ++KKP+DVPLDSLERFTNMGYSKEQI++AF +VS  HPNKDVSSLWPA
Sbjct: 241 YDLESEVTSPLNRQKKPLDVPLDSLERFTNMGYSKEQIISAFKEVSRSHPNKDVSSLWPA 300

Query: 299 VLCHLREEQVYGSQPESQIRENNPQILRTNTVVNDPSGFIGKESRTVSSSFGGHVANFCS 358
           VLC LREEQVYGSQPESQI      ++  NTVVNDP G IGK+SRT+SSSFGG+VAN CS
Sbjct: 301 VLCQLREEQVYGSQPESQI------LMNANTVVNDPKGPIGKQSRTLSSSFGGNVANLCS 354

Query: 359 PDIPPRTLRACSSANYPMQKPSQDGLKSKMNILSVPPLSLGERFEDAYEVILILDDREQF 418
           PDIPP ++RACSSA   +QKP++D +KSKMNILSVPPLS GERFEDAYEVILILDDREQF
Sbjct: 355 PDIPPFSMRACSSAGNTIQKPNKDEIKSKMNILSVPPLSFGERFEDAYEVILILDDREQF 414

Query: 419 ATQGSRSRKIVENIRTQFKIQIEVRRLPVGDGIWIARHKTLDSEYVLDFIVERKKIDDLR 478
           AT+GSRSRKI+ENI + FKIQIEVRRLPVGDGIWIARHKTL SEYVLDFIVERKKIDDLR
Sbjct: 415 ATKGSRSRKIIENICSNFKIQIEVRRLPVGDGIWIARHKTLGSEYVLDFIVERKKIDDLR 474

Query: 479 SSIRDNRYKDQXXXXXXXXXXXXIYLVEGDPNASEAAESIKTACFTTEILEGFDIQRTSG 538
           SSIRDNRYKDQ            IYLVEGDPN+SEAAESIKTACFTTEILEGFD+QRTSG
Sbjct: 475 SSIRDNRYKDQKLRLVRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSG 534

Query: 539 LGDTLRKYGYLTQAISQYYKSEFFEDNVKCSETCPPFDEFIRRCQEHEKMTVSDVFAVQL 598
           LGDTLRKYG+LTQAI QYYKS+FFEDN KCS  CPP+DEF+RRCQ+ EKMTVSDVFA+QL
Sbjct: 535 LGDTLRKYGHLTQAIYQYYKSDFFEDNNKCSAICPPYDEFVRRCQDLEKMTVSDVFAIQL 594

Query: 599 MQVPQVTEEIAMAVLDLYPTXXXXXXXXXXXDGDAHAQEEMLQRQSNNVINASASRNIFQ 658
           MQVPQVTEEIAMAVLDLYPT           DG++  QE+MLQRQSNNVIN SASRNIFQ
Sbjct: 595 MQVPQVTEEIAMAVLDLYPTLMSLARAYSLLDGNSRTQEQMLQRQSNNVINGSASRNIFQ 654

Query: 659 LVWGS 663
           LVWGS
Sbjct: 655 LVWGS 659