Miyakogusa Predicted Gene

Lj3g3v0808820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0808820.1 Non Characterized Hit- tr|I1R3V5|I1R3V5_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,42.39,1e-17,seg,NULL,
NODE_61267_length_1879_cov_14.011176.path1.1
         (379 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g023510.1 | PPR containing protein, putative | HC | chr3:7...   419   e-117
Medtr7g090775.1 | hypothetical protein | HC | chr7:35756717-3575...   125   5e-29
Medtr7g090830.1 | hypothetical protein | LC | chr7:35790289-3578...   119   5e-27
Medtr7g090780.1 | hypothetical protein | HC | chr7:35762997-3576...   119   5e-27
Medtr1g051750.1 | hypothetical protein | LC | chr1:20616591-2061...   116   4e-26
Medtr7g090820.1 | RecA-like protein | LC | chr7:35787927-3578435...   116   5e-26
Medtr7g090860.1 | RecA-like protein | LC | chr7:35800572-3579613...   109   4e-24
Medtr7g090800.1 | hypothetical protein | LC | chr7:35767974-3576...   109   4e-24
Medtr7g090780.2 | hypothetical protein | HC | chr7:35762239-3576...    79   8e-15

>Medtr3g023510.1 | PPR containing protein, putative | HC |
           chr3:7136716-7132150 | 20130731
          Length = 365

 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/359 (62%), Positives = 257/359 (71%), Gaps = 23/359 (6%)

Query: 24  FYDINAPLPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAF 83
           FYDI APLPEFR DGIP+WEKKYCT  G VPWQKIVDSK+ +YCH NV +W DS AEEAF
Sbjct: 23  FYDIRAPLPEFRHDGIPVWEKKYCTLSGCVPWQKIVDSKELIYCHHNVLDWKDSGAEEAF 82

Query: 84  QNAKKRYWARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDKAFFVLPD-EEQGDA 142
           QNAKKRYWA +NNLPCDISLPDP+++IEQIDWNP ID E IKELD AFF +PD EEQ +A
Sbjct: 83  QNAKKRYWANVNNLPCDISLPDPDAYIEQIDWNPCIDAELIKELDNAFFTVPDEEEQENA 142

Query: 143 TKNKRTKTSVDDEDAWKPTGTPLSRVLENKEW---NQEDYHDDSGNMDNTDNPWECSVTR 199
            + KRTK SVD E+ W+   T + R LEN E    NQ DYHD+S N+  TDNPW  S   
Sbjct: 143 IQYKRTKISVDGENPWECAATSVGRGLENNEVQGQNQGDYHDNSENVGTTDNPWVSSAV- 201

Query: 200 QNGGLTGNDNPWECSVTPQNGGLTDNSWKGDHAQSWGWNEGRDHDNQCRDWNSGFSQKDK 259
                        C     N GLTDN+W+G H +S GWNEGRDH+NQC  WNSG  Q DK
Sbjct: 202 -------------CG----NQGLTDNAWEGGHVKSRGWNEGRDHNNQCSGWNSGCLQTDK 244

Query: 260 GWGKVGCSSWSQQQSNDWASFSNSWGCKSSQQNVTPVNTGWGNRGANVSGWKQQENTDLS 319
           GWGKV  +SW  Q+SN+ A+  NSWGCKSSQQNV P+NTGW N G  V  WKQ EN  ++
Sbjct: 245 GWGKVRDNSWCHQKSNNLANSGNSWGCKSSQQNVIPMNTGWRNSGTIVPRWKQHENAYVT 304

Query: 320 RGLQFKRNNGGCSAWNQSY-QRREGSFRHNSGYNSSQFQRDDRETGNYWRRDRSNKRDF 377
              QF+RNNGG ++ NQSY Q R GS RHN  YN SQ QRDD +TG+YWRR++S KRDF
Sbjct: 305 SDSQFRRNNGGWNSGNQSYHQMRGGSNRHNPSYNGSQPQRDDSQTGHYWRREQSRKRDF 363


>Medtr7g090775.1 | hypothetical protein | HC |
           chr7:35756717-35755199 | 20130731
          Length = 278

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 71/99 (71%)

Query: 31  LPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKRY 90
           L   R   +PLWEKK+C  IG+VPW+K+++ K+ M  H NV NW+DSA +EAF NAK R+
Sbjct: 10  LSTVRYQAVPLWEKKFCASIGAVPWRKLIEVKRYMSLHPNVVNWDDSAVKEAFNNAKNRF 69

Query: 91  WARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDK 129
           WA IN LPCDI LPDP  +++ +DWN  IDPE   ++++
Sbjct: 70  WAEINGLPCDIPLPDPNIYLDDVDWNATIDPELYLDVER 108


>Medtr7g090830.1 | hypothetical protein | LC |
           chr7:35790289-35789120 | 20130731
          Length = 289

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 68/91 (74%)

Query: 39  IPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKRYWARINNLP 98
           +PLWEKK+C  IGSVPW+KI++ KK M  H NV NW+DSA +EAF NAK R+WA IN++P
Sbjct: 20  VPLWEKKFCASIGSVPWRKIIEVKKYMCLHPNVVNWDDSAVKEAFNNAKNRFWAEINDIP 79

Query: 99  CDISLPDPESFIEQIDWNPYIDPEQIKELDK 129
           CDI  PDP  +I+ IDWN  +D E   ++++
Sbjct: 80  CDIPSPDPNIYIDDIDWNASVDTELYLDVER 110


>Medtr7g090780.1 | hypothetical protein | HC |
           chr7:35762997-35760012 | 20130731
          Length = 314

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 16/229 (6%)

Query: 30  PLPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKR 89
           P  + R   +PLWEKK+C  +GSVPW+K+++ KK MY H NV NW+DSA +EAF NAK R
Sbjct: 29  PPLDNRFPTVPLWEKKFCESVGSVPWRKVIEGKKYMYLHPNVVNWDDSAVKEAFDNAKNR 88

Query: 90  YWARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDKAFFVLPD-EEQGDATKNKRT 148
           +WA IN  PCDI LPDP++ I+ +DWN  +DPE  +++++      + EE+G+A     +
Sbjct: 89  FWAEINEFPCDIPLPDPDTHIDDVDWNASVDPELYQDVEREAEARRNMEEKGEAAVILGS 148

Query: 149 KTSVDDEDAWKPTGTPLSRVLENKEWNQEDYHDDSGNMDNTDNPWECSVTRQNGGLTGND 208
              ++   +    G       E KE  +          +     WE +    N       
Sbjct: 149 SLLLNQSFSGPGWGPTGWGDEEEKEVTK------PSEPNYAAQGWESNQHENN-----ET 197

Query: 209 NPWECSVTPQNGGLTDNSWKGDHAQSWGWNE----GRDHDNQCRDWNSG 253
           N WE    P      +  W+       GWN+    G D  N+ +  N G
Sbjct: 198 NSWEQYRAPVVEHSKEYGWRNGQNDYHGWNQTEQYGADLHNKYQGRNGG 246


>Medtr1g051750.1 | hypothetical protein | LC |
           chr1:20616591-20614664 | 20130731
          Length = 233

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 2/112 (1%)

Query: 30  PLPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKR 89
           PL   R+  +P WEK +C+ + S+ W++IV++KK M  ++N+ NW+DSAA+EAF NAK R
Sbjct: 17  PL-HVRRPAVPRWEKLFCSSVSSITWERIVETKKYMCKYNNIVNWDDSAAKEAFDNAKSR 75

Query: 90  YWARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDKAFFVLPDEEQGD 141
           +WA IN LPC+I  PDP+ +I+ IDWN  +DPE + +LD      P +E+ +
Sbjct: 76  FWADINGLPCNIPFPDPDMYIDDIDWNSSVDPELLLDLDNV-TTFPSQEESN 126


>Medtr7g090820.1 | RecA-like protein | LC | chr7:35787927-35784353 |
           20130731
          Length = 343

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 25  YDINAPLPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQ 84
           Y+   PL   R   +P WEKK+C  +GSVPW+K+++  K M  H  V NWNDSA +EAF 
Sbjct: 21  YNGKPPLAN-RFPTVPSWEKKFCNSVGSVPWRKVIEGNKYMCLHPKVVNWNDSAVKEAFD 79

Query: 85  NAKKRYWARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDK 129
           NAK R+WA IN LPC+I LPDP  +I+ +DWN  ID E   E+++
Sbjct: 80  NAKNRFWAEINGLPCNIPLPDPNIYIDDVDWNASIDSELYLEVER 124


>Medtr7g090860.1 | RecA-like protein | LC | chr7:35800572-35796139 |
           20130731
          Length = 527

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 67/94 (71%)

Query: 35  RQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKRYWARI 94
           R   +PLWEK++C  +GSVPW+K+++ K+ MY H  V NW+DSA +EAF NAK RYWA I
Sbjct: 35  RFPTVPLWEKQFCASVGSVPWRKLIEDKRYMYMHPKVVNWDDSAVKEAFDNAKNRYWAEI 94

Query: 95  NNLPCDISLPDPESFIEQIDWNPYIDPEQIKELD 128
           N +P DI LP+P  +I+ +D N  +D E  ++++
Sbjct: 95  NGIPWDIPLPNPNIYIDDVDSNASVDSELHRDVE 128


>Medtr7g090800.1 | hypothetical protein | LC |
           chr7:35767974-35765813 | 20130731
          Length = 307

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 7/125 (5%)

Query: 30  PLPEFRQDGIPLWEKKYCTKIGSVPWQKIVDSKKSMYCHSNVHNWNDSAAEEAFQNAKKR 89
           PL + R   +P WEKK+C  +GSV W+K+++ K+ M+ H  V NW+DSA +EAF NAK R
Sbjct: 30  PLAK-RFASVPWWEKKFCATVGSVSWKKVIEGKRFMFLHPTVINWDDSAVKEAFDNAKNR 88

Query: 90  YWARINNLPCDISLPDPESFIEQIDWNPYIDPEQIKELDKAFFVLPDEEQGDATKNKRTK 149
           +WA IN  PCDI LPDP   I+ +D    +DP+   +++       + E  D  + KR  
Sbjct: 89  FWADINGFPCDIPLPDPNIHIDDVDSTASVDPQLYLDVES------EAEASDNMEEKRDV 142

Query: 150 TSVDD 154
           T + D
Sbjct: 143 TLIID 147


>Medtr7g090780.2 | hypothetical protein | HC |
           chr7:35762239-35760012 | 20130731
          Length = 251

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 16/194 (8%)

Query: 65  MYCHSNVHNWNDSAAEEAFQNAKKRYWARINNLPCDISLPDPESFIEQIDWNPYIDPEQI 124
           MY H NV NW+DSA +EAF NAK R+WA IN  PCDI LPDP++ I+ +DWN  +DPE  
Sbjct: 1   MYLHPNVVNWDDSAVKEAFDNAKNRFWAEINEFPCDIPLPDPDTHIDDVDWNASVDPELY 60

Query: 125 KELDKAFFVLPD-EEQGDATKNKRTKTSVDDEDAWKPTGTPLSRVLENKEWNQEDYHDDS 183
           +++++      + EE+G+A     +   ++   +    G       E KE  +       
Sbjct: 61  QDVEREAEARRNMEEKGEAAVILGSSLLLNQSFSGPGWGPTGWGDEEEKEVTK------P 114

Query: 184 GNMDNTDNPWECSVTRQNGGLTGNDNPWECSVTPQNGGLTDNSWKGDHAQSWGWNE---- 239
              +     WE +    N       N WE    P      +  W+       GWN+    
Sbjct: 115 SEPNYAAQGWESNQHENN-----ETNSWEQYRAPVVEHSKEYGWRNGQNDYHGWNQTEQY 169

Query: 240 GRDHDNQCRDWNSG 253
           G D  N+ +  N G
Sbjct: 170 GADLHNKYQGRNGG 183