Miyakogusa Predicted Gene

Lj3g3v0730430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0730430.1 Non Characterized Hit- tr|Q5JLB3|Q5JLB3_ORYSJ
Putative uncharacterized protein P0413C03.35 OS=Oryza
,29.72,0.00000000000004, ,CUFF.41245.1
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g013040.1 | hypothetical protein | HC | chr8:4055005-40570...   281   5e-76

>Medtr8g013040.1 | hypothetical protein | HC | chr8:4055005-4057085
           | 20130731
          Length = 224

 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 179/225 (79%), Gaps = 9/225 (4%)

Query: 4   KKPRE--IKLLCPSLSKV-TTQLVVSDEQRIDLGAIARAFGLDASTMRLNGHFISRGVDL 60
           K+ RE  I LLCPSLSK  + +LV  D+++IDLG+IA AFGLD ST+RLNG+FISRGVDL
Sbjct: 5   KRNRETKISLLCPSLSKSKSVELVTCDDEKIDLGSIAIAFGLDPSTLRLNGYFISRGVDL 64

Query: 61  VSSSVTWKSLLSFFSARGLSTGKNNRDALVATGKFCKVGNKRGHDSQDYQCGTSKVTEDE 120
           +SSSVTW SLLSFFS+RGLSTGK+N DA+V TGK     NK GH+S D++ G SKV E E
Sbjct: 65  ISSSVTWNSLLSFFSSRGLSTGKSNHDAIVVTGKDV---NKGGHESLDFRKGISKVIETE 121

Query: 121 HAC-SSRGIQLEAINLLKNKKLRQSNLGEILNGLSCKRKQLFEDANLLNFKKLKVNDEKS 179
           HA  SSRG QL+ INL KNKKL++S  GEILNGL+CKRK L ED N   FKKLK+N+EKS
Sbjct: 122 HALDSSRGNQLDDINLHKNKKLKESKSGEILNGLNCKRKYLSEDVN--QFKKLKINEEKS 179

Query: 180 GIRDKVDDLPRSISPSQITCNYMSKNLKRIREDEAIVAANYKRIR 224
            +RDKVD+   SIS SQ TC+Y S N+KRIREDEAIVAANYKRIR
Sbjct: 180 DLRDKVDEFSGSISRSQFTCSYTSNNVKRIREDEAIVAANYKRIR 224