Miyakogusa Predicted Gene

Lj3g3v0719990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0719990.1 tr|A9SEY9|A9SEY9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233124,32.14,0.000000000008,Tim17,Mitochondrial inner
membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein
PMP24; ,CUFF.41215.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g012725.1 | Tim17/Tim22/Tim23/Pmp24 family protein | HC | ...   278   4e-75

>Medtr8g012725.1 | Tim17/Tim22/Tim23/Pmp24 family protein | HC |
           chr8:3763937-3769461 | 20130731
          Length = 208

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 157/207 (75%), Gaps = 2/207 (0%)

Query: 1   MGSENQGTPDPDGVEINALXXXXXXXX-XXWTTRIFIPXXXXXXXXXXXXXISKHRKTLG 59
           MGS ++   +PD V  N             W  RIFIP             +SKHRK+LG
Sbjct: 1   MGS-SENRENPDEVVNNTFHHSSSSSSRHDWKNRIFIPTLLAGVAGAGTGLLSKHRKSLG 59

Query: 60  LANVCASYAANFSIVTGCYCGAREFAIATRKTGPEDLWSSAIAGFGSGALLGRLYGGHLG 119
           LANV ASYAANF+IVTGCYCGAREF  ATRKTGPEDLWSSAIAGFGSGALLGRLYGG  G
Sbjct: 60  LANVAASYAANFAIVTGCYCGAREFVTATRKTGPEDLWSSAIAGFGSGALLGRLYGGQFG 119

Query: 120 ALRYSVIFAVVGTSADFAILKLKDVIRDQNKTIYQHIENSKKSGNLLRLPEWFPIRVLDE 179
           A+RYSVIFAVVGT+ADF ILKLKD  RD +KTIYQ IEN KK+ N LRLPEWFPI+VLDE
Sbjct: 120 AIRYSVIFAVVGTTADFTILKLKDGWRDYSKTIYQDIENLKKNENWLRLPEWFPIKVLDE 179

Query: 180 EALAEKRAQEEQFLAQRARIRSLKEEE 206
           E LA KRAQEEQFLAQRARIRSL+++E
Sbjct: 180 EELAAKRAQEEQFLAQRARIRSLRDKE 206