Miyakogusa Predicted Gene

Lj3g3v0718360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0718360.1 Non Characterized Hit- tr|C0PJM2|C0PJM2_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,42.42,9e-19,seg,NULL,CUFF.41164.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g012410.1 | hypothetical protein | HC | chr8:3537582-35340...   156   1e-38

>Medtr8g012410.1 | hypothetical protein | HC | chr8:3537582-3534001
           | 20130731
          Length = 216

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 28/225 (12%)

Query: 10  YQPPAEFEEDSNGALIDLPMTGSTELWLLRLPYS--KDFLSDIHGKELPVNLQNDGKLAW 67
           Y+P  EF E +   L+ L +T STELWL+++P S  K+ L DI+GKEL   L  +G LA 
Sbjct: 13  YKPNKEFIEYATEPLVGLNLTDSTELWLIKVPNSHDKNLLDDINGKELSFKLNKEGTLAS 72

Query: 68  FESSSGKRYDFVSYACQEPAETVFIPSATD-PIIGKVSRRVSTVHYSDPKELEKLSATSA 126
           FE  SG+ YDF+S+A  EP ETVF+ SAT+  I GK+SRRVS VHY DP+ LEK+S+T  
Sbjct: 73  FEGVSGETYDFLSFASTEPDETVFVSSATESEIAGKISRRVSVVHYPDPRALEKISSTDP 132

Query: 127 GKVHRNSAGATGTTSSRYFPMXXXXXXXXXXXXXXXXXXXKSTVS----EVTDPSSKRVS 182
            +  +NS  A   ++ R                       KS++S      T P    V+
Sbjct: 133 NQTLQNSIAAASQSAQR-----------RSHASATKSSRAKSSISGLSERTTTPKRHGVN 181

Query: 183 KSTASEDISSGSHVPESSHGHSTGISSMSSDQSHGAKSKRRKHKE 227
           +             PESS GHS+G+S++SSD S G KSKRRKH E
Sbjct: 182 RRPQ----------PESSRGHSSGVSAVSSDHSDGGKSKRRKHTE 216