Miyakogusa Predicted Gene

Lj3g3v0707070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0707070.1 tr|B9HJ19|B9HJ19_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_873811 PE=4
SV=1,69.49,0.000000000000001,UBA,Ubiquitin-associated/translation
elongation factor EF1B, N-terminal; XPC-binding,XPC-binding
dom,gene.g45859.t1.1
         (387 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g111090.1 | RAD23 UV excision repair family protein | HC |...   494   e-140
Medtr7g407040.1 | RAD23 UV excision repair family protein | HC |...   333   2e-91
Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC | ch...   282   5e-76
Medtr7g037380.1 | ubiquitin-like protein | HC | chr7:13778886-13...    74   3e-13
Medtr7g006500.1 | UBA/Ts-N domain protein | LC | chr7:719216-720...    63   6e-10

>Medtr1g111090.1 | RAD23 UV excision repair family protein | HC |
           chr1:50171474-50175986 | 20130731
          Length = 397

 Score =  494 bits (1272), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/383 (69%), Positives = 287/383 (74%), Gaps = 14/383 (3%)

Query: 11  VSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSG 70
           +S VKKNIETVQG DVYPAAQQMLIHQGKVLKDGT+LEENKVAENSFIVIMLSK+K +SG
Sbjct: 23  ISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPASG 82

Query: 71  EGCTTSTAPLAEXXXXXXXXXXXXXXXXXXXXXXXRDMXXXXXXXXXXXXXXXXXXXXXX 130
           EG TTS AP A+                                                
Sbjct: 83  EGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAAPPASVAAPSPAPAPAPI----- 137

Query: 131 XISSGSAVSVSDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPER 190
             SS +A   SDVYG+AASNLVAGSNL G +QQILDMGGGSWDRDTV+RALRAAFNNPER
Sbjct: 138 --SSATATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPER 195

Query: 191 AVDYLYSGIPEQAEAP-----PVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQ 245
           AV+YLYSGIPEQAEAP     P +                      SSGPNANPLDLFPQ
Sbjct: 196 AVEYLYSGIPEQAEAPAVARVPASAQPVNPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQ 255

Query: 246 GLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQ 305
           GLPN+G+G AGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLI+DHQ
Sbjct: 256 GLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQ 315

Query: 306 VDFLRLINEPVEGGEGN-ILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYF 364
            DFLRLINEP+EGGEGN +LGQ+A A MPQ+V+VTPEER+AIERLEAMGFDRA VLEV+F
Sbjct: 316 ADFLRLINEPMEGGEGNNLLGQMA-AGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFF 374

Query: 365 ACNKNEELAANYLLDHMHEFDEQ 387
           ACNKNEELAANYLLDHMHEFDEQ
Sbjct: 375 ACNKNEELAANYLLDHMHEFDEQ 397


>Medtr7g407040.1 | RAD23 UV excision repair family protein | HC |
           chr7:1064684-1059097 | 20130731
          Length = 370

 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 187/238 (78%), Gaps = 4/238 (1%)

Query: 149 SNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPV 208
           SNL+AGS L   IQQIL+MGGGSWDRDTV+RALRAA+NNPERAV+YLYSGIPEQAEAP V
Sbjct: 137 SNLIAGSTLEPTIQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAV 196

Query: 209 TQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQ 268
                                  + GPN NPL+LFPQG+PN+G+    AG L+FLRNSQQ
Sbjct: 197 AASTNVGQAENPSAQAPAQLAVPAVGPNTNPLNLFPQGIPNLGAN-ENAGDLEFLRNSQQ 255

Query: 269 FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQLA 328
           FQALR MVQANPQILQPMLQELGKQNP+LM LIQ+HQ DFLRLINEP  GGE N+ GQL 
Sbjct: 256 FQALRTMVQANPQILQPMLQELGKQNPNLMELIQEHQADFLRLINEP--GGEENLEGQL- 312

Query: 329 GAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 386
           GA  PQ +++TPEE EAI+RLE MGFDR  VLEV+FACNKNE+LAANYLLDH +EFD+
Sbjct: 313 GALAPQTITITPEENEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFDD 370



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 50/56 (89%)

Query: 11 VSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTK 66
          V +VKKNIE  QGA VYPAAQQMLIHQGKVLKD T+LEEN+VAENSFIVIMLSK K
Sbjct: 23 VGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLEENQVAENSFIVIMLSKNK 78


>Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC |
           chr2:45450877-45445798 | 20130731
          Length = 366

 Score =  282 bits (721), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 182/247 (73%), Gaps = 7/247 (2%)

Query: 140 VSDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGI 199
            +D YG+AASNLVAGSNL   IQQ++DMGGGSWDRDTV RALRAAFNNPERAVDYLYSGI
Sbjct: 127 TTDTYGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGI 186

Query: 200 PEQAEAPPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGAGS 259
           PE AE      +                       PN++PL++FPQ    +    AGAGS
Sbjct: 187 PEAAEV----AVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQ--ETISGAGAGAGS 240

Query: 260 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGG 319
           LDFLRN+ QFQALR MVQ+NPQILQP+LQELGKQNP L+RLI +H  +FL+LINEP++G 
Sbjct: 241 LDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGT 300

Query: 320 EGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLD 379
           EG+   Q A   MP AV+VTP E+EAI RLEAMGFDRA+V+E + AC+++E+LAANYLL+
Sbjct: 301 EGDNFDQ-AEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLE 359

Query: 380 HMHEFDE 386
           +  +F++
Sbjct: 360 NAGDFED 366



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSGEGC 73
          VKKNIE +QG D YP  QQ+LIH GKVLKD T+L +NKV+E+ F+V+MLSK+K     G 
Sbjct: 26 VKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKVLGSAGT 85

Query: 74 TTS 76
          +++
Sbjct: 86 SST 88


>Medtr7g037380.1 | ubiquitin-like protein | HC |
           chr7:13778886-13780272 | 20130731
          Length = 176

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 10  EVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSS 69
           E+ +VK NIE +Q  D YP  QQ+LIH GKVLKD T+L +N+V+E+ F+V+MLSK  + S
Sbjct: 76  EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135


>Medtr7g006500.1 | UBA/Ts-N domain protein | LC | chr7:719216-720461
           | 20130731
          Length = 142

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 2/54 (3%)

Query: 143 VYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLY 196
            YG+A SNL+AGS L   IQQI D+G     RD V+RAL AA+NNPER V+YLY
Sbjct: 61  TYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIVIRALSAAYNNPERTVEYLY 112