Miyakogusa Predicted Gene

Lj3g3v0697060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0697060.1 Non Characterized Hit- tr|I1I1W4|I1I1W4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,68.42,0.000000000000004,Histone-fold,Histone-fold; no
description,Histone-fold; seg,NULL; CBFD_NFYB_HMF,Transcription
factor,CUFF.41141.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g081600.1 | nuclear transcription factor Y protein | HC | ...   177   1e-45
Medtr2g081630.1 | nuclear transcription factor Y protein | HC | ...   176   4e-45
Medtr3g099180.1 | nuclear transcription factor Y protein | HC | ...   112   8e-26
Medtr3g099180.2 | nuclear transcription factor Y protein | HC | ...   112   9e-26
Medtr1g082660.1 | nuclear transcription factor Y protein | HC | ...   111   1e-25
Medtr1g082660.2 | nuclear transcription factor Y protein | HC | ...   111   1e-25
Medtr7g113680.1 | nuclear transcription factor Y protein | HC | ...   110   4e-25
Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC | chr2:8235750...    97   3e-21
Medtr8g041420.1 | negative cofactor 2 transcriptional co-repress...    54   3e-08
Medtr3g012030.2 | negative cofactor 2 transcriptional co-repress...    54   4e-08
Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...    47   5e-06

>Medtr2g081600.1 | nuclear transcription factor Y protein | HC |
           chr2:34243690-34243268 | 20130731
          Length = 119

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 93/100 (93%), Gaps = 1/100 (1%)

Query: 1   MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIE 60
           MRQAGAYSG+L GGI GRTGPHSLPLARIKKIMK S EDVKMISG +PI+FSKACE+FIE
Sbjct: 1   MRQAGAYSGILNGGI-GRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIE 59

Query: 61  ELTRRSWIMAMQGKRRTLHKDDVASAVIATDVFDFLITLV 100
           ELTRRSWIMA+  KRRTL+K+DVASAVIATD+FDFLITLV
Sbjct: 60  ELTRRSWIMAIDAKRRTLNKEDVASAVIATDIFDFLITLV 99


>Medtr2g081630.1 | nuclear transcription factor Y protein | HC |
           chr2:34260235-34259869 | 20130731
          Length = 117

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 93/100 (93%), Gaps = 1/100 (1%)

Query: 1   MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIE 60
           MRQAGAYSG++ GGI GRTGPHSLPLARIKKIMK S EDVKMISG +PI+FSKACE+FIE
Sbjct: 1   MRQAGAYSGIVNGGI-GRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIE 59

Query: 61  ELTRRSWIMAMQGKRRTLHKDDVASAVIATDVFDFLITLV 100
           ELTRRSWIMA+  KRRTL+K+DVASAVIATD+FDFLITLV
Sbjct: 60  ELTRRSWIMAIDAKRRTLNKEDVASAVIATDIFDFLITLV 99


>Medtr3g099180.1 | nuclear transcription factor Y protein | HC |
           chr3:45466751-45470003 | 20130731
          Length = 217

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LPLARIKKIMK + EDV+MIS E+PI+F+KACE+FI ELT RSW+ A + KRRTL K+
Sbjct: 54  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 112

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 113 DIAAAITRTDIFDFLVDIV 131


>Medtr3g099180.2 | nuclear transcription factor Y protein | HC |
           chr3:45466714-45470003 | 20130731
          Length = 218

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LPLARIKKIMK + EDV+MIS E+PI+F+KACE+FI ELT RSW+ A + KRRTL K+
Sbjct: 54  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 112

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 113 DIAAAITRTDIFDFLVDIV 131


>Medtr1g082660.1 | nuclear transcription factor Y protein | HC |
           chr1:36798252-36800703 | 20130731
          Length = 256

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDVKMIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 100 HSLPLARIKKIMK-ADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 158

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 159 DIAAAITGTDIFDFLVDIV 177


>Medtr1g082660.2 | nuclear transcription factor Y protein | HC |
           chr1:36798518-36800703 | 20130731
          Length = 256

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDVKMIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 100 HSLPLARIKKIMK-ADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 158

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 159 DIAAAITGTDIFDFLVDIV 177


>Medtr7g113680.1 | nuclear transcription factor Y protein | HC |
           chr7:46853507-46850661 | 20130731
          Length = 311

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P+IF++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 151 HSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 209

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 210 DIAAAITRTDIFDFLVDIV 228


>Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC |
           chr2:8235750-8235016 | 20130731
          Length = 244

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
           LPLARIKKIMK + E V MIS E+PI+F+KACE+FI EL  RSW  A   KR+TL K D+
Sbjct: 86  LPLARIKKIMK-AEEGVSMISAEAPILFAKACEMFIMELATRSWANAEVNKRKTLQKSDI 144

Query: 84  ASAVIATDVFDFLITLV 100
           ASAV + +VFDFL+ +V
Sbjct: 145 ASAVSSNEVFDFLVDIV 161


>Medtr8g041420.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr8:15595067-15590978 | 20130731
          Length = 305

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
            P ARIKKIM+ + EDV  I+   P++ SKA E+F+++L  R++ + +Q   +T++   +
Sbjct: 9   FPAARIKKIMQ-ADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHL 67

Query: 84  ASAVIATDVFDFLITLV 100
              V + +VFDFL  +V
Sbjct: 68  KHCVQSYNVFDFLKDVV 84


>Medtr3g012030.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr3:3186291-3181373 | 20130731
          Length = 292

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
            P ARIKKIM+ + EDV  I+   P++ SKA E+F+++L  R++ + +Q   +T++   +
Sbjct: 9   FPAARIKKIMQ-ADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHL 67

Query: 84  ASAVIATDVFDFLITLV 100
              V + +VFDFL  +V
Sbjct: 68  KHCVQSYNVFDFLRDIV 84


>Medtr5g088760.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 302

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
            P ARIKKIM+ + ED+  I+   P++ SKA E+F+++L  R++ + +    +T++   +
Sbjct: 9   FPAARIKKIMQ-ADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHL 67

Query: 84  ASAVIATDVFDFLITLV 100
              +   +VFDFL   V
Sbjct: 68  KQCIQTCNVFDFLKDTV 84