Miyakogusa Predicted Gene

Lj3g3v0680270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0680270.1 Non Characterized Hit- tr|Q1PFW9|Q1PFW9_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,30.99,1e-17,seg,NULL; DUF761,Protein of unknown function
DUF761, plant; DUF4408,Domain of unknown function DUF44,CUFF.41178.1
         (347 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g080980.1 | cotton fiber | HC | chr2:33926026-33927663 | 2...   297   1e-80
Medtr2g012320.1 | DUF4408 domain protein | HC | chr2:3037095-303...   127   1e-29
Medtr4g019980.1 | DUF761 domain protein | LC | chr4:6383961-6386...    83   3e-16
Medtr6g080650.1 | DUF4408 domain protein | LC | chr6:29000923-29...    72   8e-13
Medtr6g080600.1 | DUF4408 domain protein | LC | chr6:28961475-28...    70   2e-12
Medtr4g061040.1 | hypothetical protein | LC | chr4:22463735-2246...    49   8e-06

>Medtr2g080980.1 | cotton fiber | HC | chr2:33926026-33927663 |
           20130731
          Length = 338

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 197/354 (55%), Positives = 224/354 (63%), Gaps = 32/354 (9%)

Query: 1   MGFLSVKTVLISTGILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNF 60
           M  LS+KT LIST ILS AM LKLTVP+VS+FI  EA PT+  F L+CFTPPYLYLLLN 
Sbjct: 3   MNSLSLKTALISTAILSTAMALKLTVPMVSHFILNEA-PTIWNFILSCFTPPYLYLLLNL 61

Query: 61  IILTIVATSKLHNHNN-SPPDTALLPTEPLIHAADVAAYGVHIPAPEPVKILENSQI-DY 118
           IILTIV TSK HNH++ SPP+T      P           V IP PE ++I E + + +Y
Sbjct: 62  IILTIVITSKFHNHHHHSPPET------PFDGIPSPVPVPVQIPVPETLQISETATLTNY 115

Query: 119 NGEMETTPVKFSGGFEMXXXXXXXXXXXXXXXAKTHAVIXXXXXXXXXXXXXXEEENLAP 178
           NG +     + S G+                     A +              E+     
Sbjct: 116 NGFVS----EASEGYRYELKTDETVAVSNESNDSV-AYVADEITPVKTTVVGVEDSVHVS 170

Query: 179 ILQRKESLEFAFNDENEKPPVSARFGHRKTVRSSPEGVTVVALGVTKPKRQETLESTWRT 238
            LQ+K  L+FAFNDENEKPP+SAR  HRKTVRSSPEG  V AL V K K+QETLESTW+T
Sbjct: 171 NLQKKVPLQFAFNDENEKPPISARSSHRKTVRSSPEGGKVNALRVAKTKKQETLESTWKT 230

Query: 239 ITEGRAMPLTRHLKKSETMETQPRRNAAPLADLN-------GPVMKKSETFGGREXXXXX 291
           ITEGRAMPL RHLKKSET E+QPRRN  PLADLN       GPVMKKS+TF G E     
Sbjct: 231 ITEGRAMPLNRHLKKSETFESQPRRNGVPLADLNGGVGGGSGPVMKKSDTFSGME----- 285

Query: 292 XXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYKEMVN 345
                      +RKE SLSQDELNRRVEAFINKFNAEMRLQRQESLRQY+EMVN
Sbjct: 286 ------KSTSPVRKEPSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYREMVN 333


>Medtr2g012320.1 | DUF4408 domain protein | HC |
           chr2:3037095-3035610 | 20130731
          Length = 280

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 93/152 (61%), Gaps = 19/152 (12%)

Query: 195 EKPPVSARFGHRKTVRSSPEGVTVVALGVTKPKRQETLESTWRTITEGRAMPLTRHLKKS 254
           +KP +S RF HRK ++  PEG    +L V K KR ETLE+TW+TITEGR++PL+RH+KK 
Sbjct: 143 DKPLLSTRFTHRKPLKFGPEGGK--SLKVVKQKRHETLENTWKTITEGRSIPLSRHMKKC 200

Query: 255 ETMETQPRRNAAPLADLNGPVMKKSE-TFGGREXXXXXXXXXXXXXXXXLRKESSLSQDE 313
           +T   Q R +  P    +   +  ++  F  +                 LRKE SLSQDE
Sbjct: 201 DTW--QNRYDDDPHQQEDSSTVSVNDFNFNNK--------------TWKLRKEPSLSQDE 244

Query: 314 LNRRVEAFINKFNAEMRLQRQESLRQYKEMVN 345
           LN+RVEAFI KFN +MRLQRQESL  Y  M+N
Sbjct: 245 LNKRVEAFIRKFNQQMRLQRQESLNHYMHMIN 276



 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 14 GILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNFIILTIVATSKLHN 73
           ++  A+GLK ++P       T     L  FFL CFTPPYL++ +N II++IVA+S+ H+
Sbjct: 12 AVIFTALGLKSSLPSA-----TTNLTLLWNFFLMCFTPPYLFITVNTIIISIVASSRFHH 66

Query: 74 HNNSP 78
           +  P
Sbjct: 67 SHTQP 71


>Medtr4g019980.1 | DUF761 domain protein | LC | chr4:6383961-6386518
           | 20130731
          Length = 189

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 48/67 (71%), Gaps = 11/67 (16%)

Query: 272 NGPVMKKSETFGGREXXXXXXXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRL 331
           +GPVMKKSETF  RE                +RKE SLSQDELN+RVEAFINKFNAEMRL
Sbjct: 133 SGPVMKKSETFSSREKSVSL-----------VRKEPSLSQDELNQRVEAFINKFNAEMRL 181

Query: 332 QRQESLR 338
           QRQESLR
Sbjct: 182 QRQESLR 188


>Medtr6g080650.1 | DUF4408 domain protein | LC |
           chr6:29000923-29003973 | 20130731
          Length = 331

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 29/128 (22%)

Query: 232 LESTWRTITEGRAMPLTRHLKKSET-----METQPRRNAAPLADLNG---PV------MK 277
           LE+TW+ I EG+      +LKKS+T     ++ +P RN       +G   PV      +K
Sbjct: 216 LEATWKAIMEGQEKTKKPYLKKSDTWTARIVKAEPFRNNGGCGFGSGDDDPVAWAERELK 275

Query: 278 KSETFGGREXXXXXXXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESL 337
           KSETF  R                 L++E S+S +ELN+R EAFI KFN +M+LQR ES 
Sbjct: 276 KSETFNDR---------------ASLKREKSMSPEELNKRAEAFIKKFNNQMKLQRLESY 320

Query: 338 RQYKEMVN 345
           +++ ++VN
Sbjct: 321 QRFLKLVN 328


>Medtr6g080600.1 | DUF4408 domain protein | LC |
           chr6:28961475-28963026 | 20130731
          Length = 316

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 27/128 (21%)

Query: 232 LESTWRTITEGRAMPLTRHLKKSET-----METQP-RRNAAPLADLNGPV------MKKS 279
           LE+TW+ I E +      HLKKS T     ++ +P R N       + PV      +KKS
Sbjct: 204 LEATWKAIMEAQEKTKKPHLKKSGTWTARIVKAEPFRNNGGFCGGDDDPVAWAQRELKKS 263

Query: 280 ETFGGREXXXXXXXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQ 339
           ETF  R                 L++E S+S +ELN+R EAFI KFN +M+LQR ES  +
Sbjct: 264 ETFNDR---------------ASLKREKSMSPEELNKRAEAFIKKFNNQMKLQRMESYHR 308

Query: 340 YKEMVNRV 347
           + ++  RV
Sbjct: 309 FMKLNKRV 316


>Medtr4g061040.1 | hypothetical protein | LC |
           chr4:22463735-22463985 | 20130731
          Length = 68

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 179 ILQRKESLEFAFNDENEKPPVSARFGHRKTVRSSPEGVTVVAL 221
           + +RK      FND+NEKP +SA+  H KTVRSSPEG  V AL
Sbjct: 9   VAKRKHRCSSRFNDDNEKPQISAKSSHWKTVRSSPEGGKVNAL 51