Miyakogusa Predicted Gene

Lj3g3v0663840.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0663840.3 tr|B9N7G4|B9N7G4_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_273528
PE=4,48.11,3e-18,seg,NULL; COP1-INTERACTING
PROTEIN-RELATED,NULL,CUFF.42786.3
         (409 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079850.1 | COP1-interacting protein, putative | HC | chr2...   530   e-150
Medtr2g079850.2 | COP1-interacting protein, putative | HC | chr2...   290   2e-78
Medtr2g012990.1 | TIR class disease resistance protein | HC | ch...   277   1e-74
Medtr1g075740.1 | COP1-interacting-like protein | HC | chr1:3356...   216   2e-56
Medtr1g041465.1 | COP1-interacting-like protein | HC | chr1:1555...   195   7e-50
Medtr8g022280.2 | COP1-interacting-like protein | HC | chr8:7881...   121   1e-27
Medtr8g022280.1 | COP1-interacting-like protein | HC | chr8:7881...   121   1e-27
Medtr3g093470.2 | COP1-interacting-like protein, putative | HC |...    81   2e-15
Medtr3g093470.4 | COP1-interacting-like protein, putative | HC |...    81   2e-15
Medtr2g012990.2 | TIR class disease resistance protein | HC | ch...    53   4e-07

>Medtr2g079850.1 | COP1-interacting protein, putative | HC |
           chr2:33658097-33652236 | 20130731
          Length = 1095

 Score =  530 bits (1365), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/364 (72%), Positives = 291/364 (79%), Gaps = 29/364 (7%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M+P+S LDHALFQLTPTRTRCDL+IVA GV+ERLASG+LEPF+SHLK AKDQISKGGYSI
Sbjct: 1   MDPSSYLDHALFQLTPTRTRCDLMIVASGVSERLASGLLEPFVSHLKCAKDQISKGGYSI 60

Query: 61  TLHPPVAHAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDSIQSSEKGNLVAETE 120
           TL P   +APWFTKATL RFVRFVSTPEV+ERFVTIEKEIVQIE S QS+E        E
Sbjct: 61  TLCPESTYAPWFTKATLQRFVRFVSTPEVIERFVTIEKEIVQIEGSSQSNE-------AE 113

Query: 121 GNVSSADGRIKRSTTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMAYARA 180
           GNVS A+GR+KRST S        +NQ+G EENSRVRLQRVLDNRKAMLCKEQAMAYARA
Sbjct: 114 GNVSYAEGRVKRSTIS--------SNQDGNEENSRVRLQRVLDNRKAMLCKEQAMAYARA 165

Query: 181 LVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNEDKRWIDEIAAMQAFSHPEL 240
           LVAG+YPES+DDLICFADAFGASRLR+AC+NFLELCKQKNEDK W+DEIAAMQ  S P L
Sbjct: 166 LVAGFYPESMDDLICFADAFGASRLREACLNFLELCKQKNEDKLWMDEIAAMQVSSQPVL 225

Query: 241 PYLRTSGIILDGEDDPSNKLN--GDGSISESTPSHASLDIGQG-------QTPSTDGRAQ 291
           PYLRTSGIIL GEDD  +K+N  GD S+S+STPSHAS DIGQ        QTPS+DGRAQ
Sbjct: 226 PYLRTSGIILAGEDDSGSKINGTGDASVSDSTPSHASFDIGQDYSLPASVQTPSSDGRAQ 285

Query: 292 IPMSWQNHHPQFIHNFQGHAFQQX---XXXXXXXXXXXXAYYPGNVQWPPNGEGSHF--D 346
           +  SW NHHPQ+IHNFQGHAFQQ                 YYPGN+QWPPNG+ SH   D
Sbjct: 286 MLRSWPNHHPQYIHNFQGHAFQQTPPYQGYMYPGMQVPSPYYPGNMQWPPNGDRSHIVHD 345

Query: 347 REMD 350
           +EMD
Sbjct: 346 QEMD 349


>Medtr2g079850.2 | COP1-interacting protein, putative | HC |
           chr2:33657114-33652252 | 20130731
          Length = 943

 Score =  290 bits (741), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 153/197 (77%), Gaps = 14/197 (7%)

Query: 168 MLCKEQAMAYARALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNEDKRWID 227
           MLCKEQAMAYARALVAG+YPES+DDLICFADAFGASRLR+AC+NFLELCKQKNEDK W+D
Sbjct: 1   MLCKEQAMAYARALVAGFYPESMDDLICFADAFGASRLREACLNFLELCKQKNEDKLWMD 60

Query: 228 EIAAMQAFSHPELPYLRTSGIILDGEDDPSNKLN--GDGSISESTPSHASLDIGQG---- 281
           EIAAMQ  S P LPYLRTSGIIL GEDD  +K+N  GD S+S+STPSHAS DIGQ     
Sbjct: 61  EIAAMQVSSQPVLPYLRTSGIILAGEDDSGSKINGTGDASVSDSTPSHASFDIGQDYSLP 120

Query: 282 ---QTPSTDGRAQIPMSWQNHHPQFIHNFQGHAFQQX---XXXXXXXXXXXXAYYPGNVQ 335
              QTPS+DGRAQ+  SW NHHPQ+IHNFQGHAFQQ                 YYPGN+Q
Sbjct: 121 ASVQTPSSDGRAQMLRSWPNHHPQYIHNFQGHAFQQTPPYQGYMYPGMQVPSPYYPGNMQ 180

Query: 336 WPPNGEGSHF--DREMD 350
           WPPNG+ SH   D+EMD
Sbjct: 181 WPPNGDRSHIVHDQEMD 197


>Medtr2g012990.1 | TIR class disease resistance protein | HC |
           chr2:3415074-3419910 | 20130731
          Length = 890

 Score =  277 bits (709), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/321 (46%), Positives = 212/321 (66%), Gaps = 9/321 (2%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M+  + LD+ALFQLTPTRTR +L++  G V E++ASG+ EPF+SHLK  KD+ISKGGYSI
Sbjct: 1   MDSKTILDYALFQLTPTRTRFELLVFNGAVREKIASGLFEPFISHLKFVKDEISKGGYSI 60

Query: 61  TLHPPVAHAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDSIQSSEKGNLVA-ET 119
            L PP   A WF+K+T  RFVRFVSTP VLERFV++EKEI QIE   +++     VA   
Sbjct: 61  RLLPPSNTAFWFSKSTFERFVRFVSTPAVLERFVSLEKEIQQIESQFEANALSMSVAIPD 120

Query: 120 EGNVSSADGRIKR-STTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMAYA 178
           EGN+   +G  +R S ++KL D L G + +  EENS++ LQR+L++R A+L KEQAMAY 
Sbjct: 121 EGNLPHTNGNARRLSDSAKLNDVLEGVDTK-EEENSKISLQRLLESRMALLRKEQAMAYT 179

Query: 179 RALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNEDKRWIDEIAAMQAFSHP 238
           R+LVAG+  +++DDL+ FA+AFGASRLR+AC+NF +L K+K  D  W+ E+AAMQ+   P
Sbjct: 180 RSLVAGFDIDNIDDLVYFANAFGASRLREACINFKDLWKKKRADDLWVQEVAAMQSNLPP 239

Query: 239 ELPYLRTSGIILDGEDDPSNKLNGDGSISESTPSHASLDIGQGQTPSTD----GRAQIP- 293
            L +  +SGIIL  +    ++ N + S ++S PS       + +    +        +P 
Sbjct: 240 ALSFSGSSGIILANDIAAHDQNNKNNSSTDSIPSGDENAFLENKKEDVNLSHMANVHMPM 299

Query: 294 -MSWQNHHPQFIHNFQGHAFQ 313
            M W  + P +++N Q  + Q
Sbjct: 300 HMPWPYNVPPYMYNLQNPSQQ 320


>Medtr1g075740.1 | COP1-interacting-like protein | HC |
           chr1:33565362-33556117 | 20130731
          Length = 1267

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/327 (41%), Positives = 179/327 (54%), Gaps = 38/327 (11%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M  + RLD A+FQLTPTRTR DLII   G  E++ASG+L PFLSHLK+A+DQI KGGYSI
Sbjct: 1   MNSSMRLDSAVFQLTPTRTRFDLIITVHGKKEKIASGLLNPFLSHLKAAQDQIDKGGYSI 60

Query: 61  TLHPP-VAHAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIED--SIQSSEKGNLVA 117
            L P   + A WFTK TL RFVRFV+TPE+LER  T E EI+QIE+  +IQ +    +  
Sbjct: 61  VLEPEGGSDATWFTKGTLERFVRFVNTPEILERVYTTESEILQIEEAIAIQGNNSMGIST 120

Query: 118 ETEGNVSSADGRIKRSTTSKLKDELS------------GTNQEGYEENSRVRLQRVLDNR 165
             E  V  A+    R T     +E +                   E NS+V+L +VL+ R
Sbjct: 121 VEENQVKHAENTEGRKTQHDTNEEKAIVLYKPDAQPPEANGHATLEGNSKVQLLKVLETR 180

Query: 166 KAMLCKEQAMAYARALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNEDKRW 225
           K++L KEQ MA+ARA+ AG+  + +  L+ FA+ FGASRL  A   F +L K+K+E  +W
Sbjct: 181 KSVLQKEQGMAFARAVAAGFDIDYIPALMSFAECFGASRLMDASAKFRDLWKRKHETGQW 240

Query: 226 ID-EIAAMQAFSHPELPYLRTSGIILDGEDDPSNKLNGDGSISESTPSHASLDIGQGQTP 284
           ++ E AA    S P+   L  SGIIL     P+        ++      AS D+      
Sbjct: 241 LEMEAAAEMMSSRPDFTALNGSGIIL-----PNMAFASPTELNSENNGKASSDV------ 289

Query: 285 STDGRAQIPMSWQNH----HPQFIHNF 307
                   PM  Q H    H QF H+ 
Sbjct: 290 -------PPMDRQGHQDNMHAQFPHHM 309


>Medtr1g041465.1 | COP1-interacting-like protein | HC |
           chr1:15556143-15564155 | 20130731
          Length = 1197

 Score =  195 bits (495), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 114/276 (41%), Positives = 160/276 (57%), Gaps = 21/276 (7%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M  + RLD A+FQLTPTRTR DL+I   G  E++ASG+L PFL HLK+A+DQ+ KGGYSI
Sbjct: 1   MNSSPRLDSAVFQLTPTRTRFDLVITVNGKQEKIASGLLSPFLCHLKAAQDQMDKGGYSI 60

Query: 61  TLHPPVA-HAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDSIQSSEKGNL---- 115
            L P       WFT+ T+ RFVRFVSTPE+LER  TIE EI+QIE++I      ++    
Sbjct: 61  VLVPEHGCDVTWFTRRTIERFVRFVSTPEILERVYTIESEILQIEEAIAIQGNNSIGIGT 120

Query: 116 --------VAETEGNVSSADGRIKRSTTSKLKDELSGTNQEGYEEN--------SRVRLQ 159
                   V  TEG       +IK+ +  +       ++ +  E N        S+V+L 
Sbjct: 121 VEENQIKQVESTEGTFERTGRKIKQDSNVEKAVVPYKSDTQPPEANGSTSSQGKSKVQLL 180

Query: 160 RVLDNRKAMLCKEQAMAYARALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQK 219
           RVL+ RK +L KEQ MA+ARA+ AG+  +S+  L+ FA+ F ASRL  AC  F+ L K K
Sbjct: 181 RVLETRKLVLHKEQGMAFARAVAAGFDIDSIPALMSFAECFEASRLMDACRKFMSLWKIK 240

Query: 220 NEDKRWIDEIAAMQAFSHPELPYLRTSGIILDGEDD 255
           +E+  W++   +    +  +   + TS   +D E +
Sbjct: 241 HENGLWLEIETSEVTPNRADFSTINTSHTEMDSESN 276


>Medtr8g022280.2 | COP1-interacting-like protein | HC |
           chr8:7881921-7871209 | 20130731
          Length = 1294

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 121/238 (50%), Gaps = 31/238 (13%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M  ++ LD+A+ QL+P R+RC+L++ + G  E+LASG+++P+L HLK A++Q +    SI
Sbjct: 1   MRSDTLLDYAVLQLSPKRSRCELLVSSDGFTEKLASGLVKPYLDHLKFAEEQAAHSVQSI 60

Query: 61  TLHPPVAH--APWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDS--IQSSEKGNLV 116
            L          WFTK T  RFVR+V  PEVLE   T + E+ Q+E +  I S   G+  
Sbjct: 61  RLEIDRRRNAETWFTKGTFERFVRYVGMPEVLEMVNTFDAEMSQLEAARKIYSQGTGDQR 120

Query: 117 AETEGNVSSADGRIKRSTTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMA 176
            +++G                      GT   G  +++   L R +D R + + ++   A
Sbjct: 121 MDSQGG--------------------DGTRVIGAADSTTKELLRAIDVRLSAVRQDLTTA 160

Query: 177 YARALVAGYYPESLDDLICFADAFGASRLRQACVNFL-------ELCKQKNEDKRWID 227
           YA A  +G+ P ++  L  FA  F A RL +AC  +        EL  Q++E  R  D
Sbjct: 161 YANASASGFNPYTVSQLKHFAHQFRAHRLNEACTKYSSVYERRPELITQQDEKPRGND 218


>Medtr8g022280.1 | COP1-interacting-like protein | HC |
           chr8:7881921-7871209 | 20130731
          Length = 1294

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 121/238 (50%), Gaps = 31/238 (13%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKGGYSI 60
           M  ++ LD+A+ QL+P R+RC+L++ + G  E+LASG+++P+L HLK A++Q +    SI
Sbjct: 1   MRSDTLLDYAVLQLSPKRSRCELLVSSDGFTEKLASGLVKPYLDHLKFAEEQAAHSVQSI 60

Query: 61  TLHPPVAH--APWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDS--IQSSEKGNLV 116
            L          WFTK T  RFVR+V  PEVLE   T + E+ Q+E +  I S   G+  
Sbjct: 61  RLEIDRRRNAETWFTKGTFERFVRYVGMPEVLEMVNTFDAEMSQLEAARKIYSQGTGDQR 120

Query: 117 AETEGNVSSADGRIKRSTTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMA 176
            +++G                      GT   G  +++   L R +D R + + ++   A
Sbjct: 121 MDSQGG--------------------DGTRVIGAADSTTKELLRAIDVRLSAVRQDLTTA 160

Query: 177 YARALVAGYYPESLDDLICFADAFGASRLRQACVNFL-------ELCKQKNEDKRWID 227
           YA A  +G+ P ++  L  FA  F A RL +AC  +        EL  Q++E  R  D
Sbjct: 161 YANASASGFNPYTVSQLKHFAHQFRAHRLNEACTKYSSVYERRPELITQQDEKPRGND 218


>Medtr3g093470.2 | COP1-interacting-like protein, putative | HC |
           chr3:42718020-42711454 | 20130731
          Length = 1053

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 31/225 (13%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKG---G 57
           +E ++ LD+A   + P + R +  +  G  +E++A+G LE  L HL    D  +KG    
Sbjct: 5   IEGDASLDYASINIFPNQNRYEAYVCKGNQSEKVATGHLEHLLPHLPGINDLHAKGFDAN 64

Query: 58  YSITLHPPVAHAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDSIQSSEKGNLVA 117
           + + L   +  A WF+K T+ RF+  VS+P+ +    TI  E+ Q+EDS +     +L  
Sbjct: 65  FDLKLPKDLHAAEWFSKETVKRFLHVVSSPDSINVINTIMDEMSQLEDSKKF--HVSLYG 122

Query: 118 ETEGNVSSADGRIKRSTTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMAY 177
           + E +  S+D                          S+  L R +D R   L  + A  +
Sbjct: 123 KPEVSTVSSDA-------------------------SKNELLRAMDLRLTALSNKLAETF 157

Query: 178 ARALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNED 222
            +A  A   P+ +  L+ F+  FGA+ L  +   F+EL  QK++D
Sbjct: 158 NKAADAKCSPKDMAYLVKFSQHFGATNLEYSLCKFIEL-NQKSQD 201


>Medtr3g093470.4 | COP1-interacting-like protein, putative | HC |
           chr3:42718020-42711454 | 20130731
          Length = 1014

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 31/225 (13%)

Query: 1   MEPNSRLDHALFQLTPTRTRCDLIIVAGGVNERLASGILEPFLSHLKSAKDQISKG---G 57
           +E ++ LD+A   + P + R +  +  G  +E++A+G LE  L HL    D  +KG    
Sbjct: 5   IEGDASLDYASINIFPNQNRYEAYVCKGNQSEKVATGHLEHLLPHLPGINDLHAKGFDAN 64

Query: 58  YSITLHPPVAHAPWFTKATLLRFVRFVSTPEVLERFVTIEKEIVQIEDSIQSSEKGNLVA 117
           + + L   +  A WF+K T+ RF+  VS+P+ +    TI  E+ Q+EDS +     +L  
Sbjct: 65  FDLKLPKDLHAAEWFSKETVKRFLHVVSSPDSINVINTIMDEMSQLEDSKKF--HVSLYG 122

Query: 118 ETEGNVSSADGRIKRSTTSKLKDELSGTNQEGYEENSRVRLQRVLDNRKAMLCKEQAMAY 177
           + E +  S+D                          S+  L R +D R   L  + A  +
Sbjct: 123 KPEVSTVSSDA-------------------------SKNELLRAMDLRLTALSNKLAETF 157

Query: 178 ARALVAGYYPESLDDLICFADAFGASRLRQACVNFLELCKQKNED 222
            +A  A   P+ +  L+ F+  FGA+ L  +   F+EL  QK++D
Sbjct: 158 NKAADAKCSPKDMAYLVKFSQHFGATNLEYSLCKFIEL-NQKSQD 201


>Medtr2g012990.2 | TIR class disease resistance protein | HC |
           chr2:3416909-3419910 | 20130731
          Length = 684

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 207 QACVNFLELCKQKNEDKRWIDEIAAMQAFSHPELPYLRTSGIILDGEDDPSNKLNGDGSI 266
           +AC+NF +L K+K  D  W+ E+AAMQ+   P L +  +SGIIL  +    ++ N + S 
Sbjct: 2   EACINFKDLWKKKRADDLWVQEVAAMQSNLPPALSFSGSSGIILANDIAAHDQNNKNNSS 61

Query: 267 SESTPSHASLDIGQGQTPSTD----GRAQIP--MSWQNHHPQFIHNFQGHAFQ 313
           ++S PS       + +    +        +P  M W  + P +++N Q  + Q
Sbjct: 62  TDSIPSGDENAFLENKKEDVNLSHMANVHMPMHMPWPYNVPPYMYNLQNPSQQ 114