Miyakogusa Predicted Gene
- Lj3g3v0663830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0663830.1 Non Characterized Hit- tr|I3S0C4|I3S0C4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; DUF1218,Protein of
unknown function DUF12,CUFF.42782.1
(186 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-336429... 291 2e-79
Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-357252... 194 5e-50
Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-357253... 194 5e-50
Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-357252... 194 5e-50
Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-357252... 194 5e-50
Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-238049... 159 2e-39
Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-236539... 159 2e-39
Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-496023... 141 5e-34
Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-496128... 107 9e-24
Medtr1g109690.1 | fiber protein Fb34 | LC | chr1:49609891-496095... 67 1e-11
Medtr4g077250.1 | transmembrane protein, putative | HC | chr4:29... 54 9e-08
Medtr8g027455.1 | hypothetical protein | LC | chr8:9763400-97681... 52 3e-07
Medtr7g114270.1 | fiber protein Fb34 | LC | chr7:47160912-471612... 51 5e-07
>Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-33642906
| 20130731
Length = 186
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/174 (81%), Positives = 154/174 (88%), Gaps = 1/174 (0%)
Query: 1 MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFL 60
MASKL+LIIVFVFD+IAFGLAVAAEQRRSTAKIV D E NYNYCVY+SD ATGYGV AFL
Sbjct: 1 MASKLLLIIVFVFDVIAFGLAVAAEQRRSTAKIVPDKEQNYNYCVYDSDRATGYGVVAFL 60
Query: 61 FLMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHT 120
FLM+SQI+IMV SRCFCCGKPLKPGGSRACA++LFI+CWVFF+IAEVCLLAGSVENAYHT
Sbjct: 61 FLMISQIVIMVVSRCFCCGKPLKPGGSRACAIVLFIVCWVFFIIAEVCLLAGSVENAYHT 120
Query: 121 KYRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYL 174
KYRTLFV D PPSCETVRK T+I+S+FYYINYSSARESFQPYL
Sbjct: 121 KYRTLFVSD-PPSCETVRKGVFAAGAAFVFFTSIVSKFYYINYSSARESFQPYL 173
>Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-35725261
| 20130731
Length = 183
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFL 60
MAS L+L++VFVFDLIAF LAVAAEQRRS+A + + E YC Y+SDIATG GVG+
Sbjct: 1 MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGR-KYCQYDSDIATGLGVGSLF 59
Query: 61 FLMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHT 120
L+ SQ++IMV +RC CCG+ ++P GSR+ A+ LFI W+ F+IA CLLAGSV+NAYHT
Sbjct: 60 ILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHT 119
Query: 121 KYRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYLGGETGV 180
KYR L + + PSC+T+RK T I+SE YY+++S A P +TGV
Sbjct: 120 KYRDL-LGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGV 178
Query: 181 GM 182
M
Sbjct: 179 TM 180
>Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-35725376
| 20130731
Length = 183
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFL 60
MAS L+L++VFVFDLIAF LAVAAEQRRS+A + + E YC Y+SDIATG GVG+
Sbjct: 1 MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGR-KYCQYDSDIATGLGVGSLF 59
Query: 61 FLMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHT 120
L+ SQ++IMV +RC CCG+ ++P GSR+ A+ LFI W+ F+IA CLLAGSV+NAYHT
Sbjct: 60 ILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHT 119
Query: 121 KYRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYLGGETGV 180
KYR L + + PSC+T+RK T I+SE YY+++S A P +TGV
Sbjct: 120 KYRDL-LGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGV 178
Query: 181 GM 182
M
Sbjct: 179 TM 180
>Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-35725261
| 20130731
Length = 183
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFL 60
MAS L+L++VFVFDLIAF LAVAAEQRRS+A + + E YC Y+SDIATG GVG+
Sbjct: 1 MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGR-KYCQYDSDIATGLGVGSLF 59
Query: 61 FLMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHT 120
L+ SQ++IMV +RC CCG+ ++P GSR+ A+ LFI W+ F+IA CLLAGSV+NAYHT
Sbjct: 60 ILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHT 119
Query: 121 KYRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYLGGETGV 180
KYR L + + PSC+T+RK T I+SE YY+++S A P +TGV
Sbjct: 120 KYRDL-LGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGV 178
Query: 181 GM 182
M
Sbjct: 179 TM 180
>Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-35725261
| 20130731
Length = 183
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFL 60
MAS L+L++VFVFDLIAF LAVAAEQRRS+A + + E YC Y+SDIATG GVG+
Sbjct: 1 MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGR-KYCQYDSDIATGLGVGSLF 59
Query: 61 FLMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHT 120
L+ SQ++IMV +RC CCG+ ++P GSR+ A+ LFI W+ F+IA CLLAGSV+NAYHT
Sbjct: 60 ILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHT 119
Query: 121 KYRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYLGGETGV 180
KYR L + + PSC+T+RK T I+SE YY+++S A P +TGV
Sbjct: 120 KYRDL-LGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGV 178
Query: 181 GM 182
M
Sbjct: 179 TM 180
>Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-23804986
| 20130731
Length = 191
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
Query: 2 ASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLF 61
S LV ++V VF L+AFG AVAAE+RRS I N YCVY+SD+ATGYGVGAFLF
Sbjct: 6 GSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGVGAFLF 65
Query: 62 LMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHTK 121
L+ + L+M ++C C G+PL PGG+RA ++I F+ W F++AE CL+AG+ +NAYHTK
Sbjct: 66 LLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTK 125
Query: 122 YRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARES 169
YR + N SCE++RK T +++ +YY+ ++ A +
Sbjct: 126 YRGIIYAQN-FSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTT 172
>Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-23653955
| 20130731
Length = 191
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
Query: 2 ASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLF 61
S LV ++V VF L+AFG AVAAE+RRS I N YCVY+SD+ATGYGVGAFLF
Sbjct: 6 GSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGVGAFLF 65
Query: 62 LMVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHTK 121
L+ + L+M ++C C G+PL PGG+RA ++I F+ W F++AE CL+AG+ +NAYHTK
Sbjct: 66 LLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTK 125
Query: 122 YRTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARES 169
YR + N SCE++RK T +++ +YY+ ++ A +
Sbjct: 126 YRGIIYAQN-FSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTT 172
>Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-49602362
| 20130731
Length = 193
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 2/184 (1%)
Query: 3 SKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLFL 62
S +++++ L+AF A+ AE+RRS AK+V D +CVY +D +T YGV AF L
Sbjct: 4 SVTIIVLIISLHLLAFVFAIGAERRRSEAKVVPDEYDERTFCVYTTDASTVYGVAAFSLL 63
Query: 63 MVSQILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHTKY 122
++SQ ++ +RC CCGK L G S CAVI FI+ W F+ AE CLLAGS NAYHTKY
Sbjct: 64 LLSQTVLNAVTRCLCCGKGLISGCSTTCAVIFFILSWTGFLAAEACLLAGSARNAYHTKY 123
Query: 123 RTLFVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSARESFQPYLGGETGVGM 182
R FV + SC T+RK + + S YY ++ A F E G+G+
Sbjct: 124 RGNFVTHD-LSCATLRKGVFAAGAALTLFSMLASILYYWAHAKADTGFWEKHQNE-GIGL 181
Query: 183 GAYK 186
+
Sbjct: 182 ATHN 185
>Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-49612840
| 20130731
Length = 190
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 6 VLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLFLMVS 65
VLIIV L AF A AE R A+ + + + CVY +D +T YG AF FL+V+
Sbjct: 7 VLIIVIFAHLFAFFYAFRAEVNRYWAEELPNDDGTI--CVYTTDASTFYGFVAFSFLLVN 64
Query: 66 QILIMVASRCFCCGKPLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHTKYRTL 125
Q+ + + +RCFCCGK L PG S +CA+I +I+ W+ F+ AE CLL GS +AY TKY+
Sbjct: 65 QVFLNLITRCFCCGKGLVPGRSTSCAIICYILSWIGFLAAEACLLVGSTTSAYKTKYQGY 124
Query: 126 FVKDNPPSCETVRKXXXXXXXXXXXXTAIISEFYYINYSSA 166
+ SC +RK + + S YY Y A
Sbjct: 125 Y-STLGLSCSALRKGVFAVGAVLTLFSMLTSILYYWAYCKA 164
>Medtr1g109690.1 | fiber protein Fb34 | LC |
chr1:49609891-49609504 | 20130731
Length = 98
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 15 LIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLFLMVSQILIMVASR 74
L+AF A E+ R A + + CVY++D +T YG GAF L+++Q+ + + +R
Sbjct: 16 LLAFFCAFRGEENRIWALEI--PNVDETICVYDTDDSTIYGFGAFFCLLINQVFLNLITR 73
Query: 75 CFCCGKPLKPGGSRACAVILFIICW 99
CFCCGK L G + CA+I +I+ W
Sbjct: 74 CFCCGKGLISGRANTCAIISYILSW 98
>Medtr4g077250.1 | transmembrane protein, putative | HC |
chr4:29600281-29602521 | 20130731
Length = 211
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MASKLVLI--IVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGA 58
M K++++ IV L++ + AAE R + N N C+Y A G+ A
Sbjct: 1 MERKVMIVCCIVGFLGLLSAATSFAAEATRIKGYQI--QFINPNQCIYPRSPALPLGLTA 58
Query: 59 FLFLMVSQILIMVASRCFCCGKPLK-PGGSRACAVILFIICWVFFVIAEVCLLAGSVEN 116
L LM+SQI+I V++ C CC K + P + A+ F++ W +VIA + LL G+ N
Sbjct: 59 ALSLMISQIVINVSTGCICCRKSSRIPDSNWTVALACFVLSWFTYVIAFLLLLTGAALN 117
>Medtr8g027455.1 | hypothetical protein | LC | chr8:9763400-9768134
| 20130731
Length = 431
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 31 AKIVLDSEANYNYCVYNSDIATGYGVGAFLFLMVSQILIMVASRCFCCGKPLKPGGSRAC 90
AK+V D + +CVY D +T +GV AF L++SQ + + C CCGK L G S C
Sbjct: 319 AKVVPDEYDDRTFCVYTMDASTVFGVAAFSLLLLSQTVRNTVTSCLCCGKGLISGCSTIC 378
Query: 91 A 91
A
Sbjct: 379 A 379
>Medtr7g114270.1 | fiber protein Fb34 | LC |
chr7:47160912-47161230 | 20130731
Length = 70
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 24 AEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLFLMVSQILIMVASRCFCCGKPLK 83
+E +++ AK+V D + +CVY D +T AF L++SQ + + C CCGK L
Sbjct: 2 SETQQTRAKVVPDEYDDRTFCVYTMDAST-----AFSLLLLSQTVRNTVTSCLCCGKGLI 56
Query: 84 PGGSRACAVILFI 96
G S CAVI +
Sbjct: 57 SGCSTTCAVIFIL 69