Miyakogusa Predicted Gene

Lj3g3v0642580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642580.1 tr|Q6UP31|Q6UP31_CHLRE NADH:ubiquinone
oxidoreductase 18 kDa subunit OS=Chlamydomonas reinhardtii
GN,35.06,1e-17,NDUFA12,NADH:ubiquinone oxidoreductase, 17.2kDa
subunit; SUBFAMILY NOT NAMED,NULL; NADH-UBIQUINONE O,CUFF.41082.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g009960.1 | NADH:ubiquinone oxidoreductase 17.2 kDa subuni...   283   6e-77

>Medtr8g009960.1 | NADH:ubiquinone oxidoreductase 17.2 kDa subunit |
           HC | chr8:2489339-2485436 | 20130731
          Length = 159

 Score =  283 bits (723), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 132/153 (86%), Positives = 144/153 (94%)

Query: 2   ASLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKYY 61
           +S+VKSILN+VKEKGLGGF RHLKD+G++RCLPDGNLLQTKIH IGA LVGVDK+GNKYY
Sbjct: 3   SSVVKSILNTVKEKGLGGFFRHLKDEGYLRCLPDGNLLQTKIHNIGATLVGVDKYGNKYY 62

Query: 62  EKIENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHKE 121
           EK ENT  GRHRWVEYAEK RYNASQVP EWHGWLHFITDHTGDELLLLKPKRYG++HKE
Sbjct: 63  EKTENTQYGRHRWVEYAEKSRYNASQVPAEWHGWLHFITDHTGDELLLLKPKRYGLDHKE 122

Query: 122 NLSGEGEQFIYHSKGHALNPGQRNWTRYQPWES 154
           NLSG GE+FIY+SKGHALNPGQRNWTRYQPW+S
Sbjct: 123 NLSGHGEEFIYNSKGHALNPGQRNWTRYQPWQS 155