Miyakogusa Predicted Gene

Lj3g3v0642480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642480.1 Non Characterized Hit- tr|K3ZY46|K3ZY46_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si031528,65.91,5e-19,Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NULL; Translational machinery components,NUL,CUFF.41060.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g083650.1 | 50S ribosomal L18-like protein | HC | chr7:322...   159   4e-40
Medtr1g080050.1 | 50S ribosomal L18-like protein | HC | chr1:355...   123   3e-29
Medtr1g063230.1 | 50S ribosomal L18-like protein | HC | chr1:278...    94   3e-20

>Medtr7g083650.1 | 50S ribosomal L18-like protein | HC |
          chr7:32201784-32203998 | 20130731
          Length = 124

 Score =  159 bits (403), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 83/88 (94%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          MTL KRYVLRLF S+KYITANVVDRN+GRIVATSST EH +K+SLECGRSCNAKAAA+VG
Sbjct: 1  MTLTKRYVLRLFISIKYITANVVDRNSGRIVATSSTAEHDIKQSLECGRSCNAKAAAVVG 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLARRLKVEGLNEGEGRGIHVNV KE+
Sbjct: 61 EVLARRLKVEGLNEGEGRGIHVNVNKEI 88


>Medtr1g080050.1 | 50S ribosomal L18-like protein | HC |
          chr1:35567867-35566265 | 20130731
          Length = 110

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 14/88 (15%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          MTL KRYVLRLF S+KYITANVVDRN+GRIVATSST EH +K+SLEC             
Sbjct: 1  MTLTKRYVLRLFISIKYITANVVDRNSGRIVATSSTAEHDIKQSLEC------------- 47

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
           VLARRLKVEGLNEGEGRGIHVNV KE+
Sbjct: 48 -VLARRLKVEGLNEGEGRGIHVNVNKEI 74


>Medtr1g063230.1 | 50S ribosomal L18-like protein | HC |
          chr1:27884620-27884249 | 20130731
          Length = 123

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 65/84 (77%)

Query: 5  KRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVGEVLA 64
          +R+VL+++ S K++TANVVD  + R+VA++STVE ++ ++ E GRSCN KAAA +GEVLA
Sbjct: 4  RRFVLKVYVSAKHMTANVVDWQHRRVVASASTVEKSISDAFELGRSCNVKAAASIGEVLA 63

Query: 65 RRLKVEGLNEGEGRGIHVNVKKEV 88
           RLK E    G G G+H++V+KE+
Sbjct: 64 MRLKTEEAGIGMGGGVHMDVEKEI 87