Miyakogusa Predicted Gene
- Lj3g3v0618200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0618200.1 tr|G7LDH4|G7LDH4_MEDTR Retrograde Golgi transport
protein RGP1-like protein OS=Medicago truncatula G,85.53,0,seg,NULL;
Rgp1,Reduced growth phenotype protein 1; SUBFAMILY NOT NAMED,NULL;
REDUCED GROWTH PHENOTYP,CUFF.41110.1
(530 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g009530.2 | Rgp1 protein | HC | chr8:2234813-2244988 | 201... 850 0.0
Medtr8g009530.1 | Rgp1 protein | HC | chr8:2234813-2244988 | 201... 850 0.0
>Medtr8g009530.2 | Rgp1 protein | HC | chr8:2234813-2244988 |
20130731
Length = 529
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/532 (78%), Positives = 455/532 (85%), Gaps = 7/532 (1%)
Query: 1 MLQGRLSFFGGGDSRLVDNNSSKGEPLVPTLKLETDKQVYRPGDPVVVTIQISNPSNGYS 60
ML+GRLSFFGGGDS L+D NSSK E +VPTLKLETDKQVYRPGDPV++TIQISNPSNGYS
Sbjct: 1 MLKGRLSFFGGGDSGLLDKNSSKNEEIVPTLKLETDKQVYRPGDPVIITIQISNPSNGYS 60
Query: 61 FLMERLSFEIKGIEKLDTQWFATQKPLPGSKQRRGEHVFLDCSCPILVANQIVNAGTSKS 120
FLMERLSFEI+GIEKLDTQWFATQKPLPGS+QRRGEHVF+D S PILVANQI+NAGTSKS
Sbjct: 61 FLMERLSFEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQIINAGTSKS 120
Query: 121 YVVRTLLPSIIPPSYKGSNIRYLYYVKSAVTGGWLILENGQSHAETSNDVTDLDVRIPLQ 180
YVVRT+LPSIIPPSYKGSNIRYLYYVKSA+TGGWLILENGQS E +NDVTDL+VRIPLQ
Sbjct: 121 YVVRTMLPSIIPPSYKGSNIRYLYYVKSAITGGWLILENGQSRTEPTNDVTDLEVRIPLQ 180
Query: 181 VWINQKSSGFPTDEDIVPLTTVQPDIFWKEMDGDADWVRANDFYDGIEEGYXXXXXXXXX 240
+W+NQKSSGFP D+DIVPLTTVQ DIFWKEMDGDADWVRAND YDG+E+GY
Sbjct: 181 IWVNQKSSGFPLDDDIVPLTTVQLDIFWKEMDGDADWVRANDIYDGVEDGYDSSRDDISS 240
Query: 241 XXXYNPSKENLHXXXXXXXXXXXXXXXXXXXXXXXXEIHRTSLSSNMALPRLSVA--VSD 298
YNP KEN+ E HRTSLSSN+ALPRLSVA +SD
Sbjct: 241 VSSYNPMKENM----VRGFGSSLSLRSSSARSLNRLEGHRTSLSSNIALPRLSVAEVLSD 296
Query: 299 PGADVLSTQKSFGIVSPSDQQQFRKPFSADDDAGVSSSPEAG-AESLSSEGFIRGKSYNI 357
GAD LSTQKSF +VSP++QQ+F K FSA+DDAGVSSSPEAG ESLSSEGFIRG+SYNI
Sbjct: 297 TGADALSTQKSFTMVSPTEQQKFGKQFSAEDDAGVSSSPEAGPVESLSSEGFIRGRSYNI 356
Query: 358 RLDDQVLLKFSPKNSDSTHYFSDVIGGTLTFFHEEGARRCLEISVTLETSETINRRFVHP 417
RLDDQVLLKFSPKNSDST+YFSD+IGGTLTFFHE+G RRCLEISVTLETSETINRRFVHP
Sbjct: 357 RLDDQVLLKFSPKNSDSTYYFSDMIGGTLTFFHEQGGRRCLEISVTLETSETINRRFVHP 416
Query: 418 SRRNSPTITKVQSDHHEVVADLVQTSFLFSVPMDGPMSFSTPHVSVQWVLRFEFFTTPKH 477
SRRNSPTITKVQSDHHEVVADL QTSFLFSVP+DGPM+FSTPHVSVQWVLRFEF+TTPK
Sbjct: 417 SRRNSPTITKVQSDHHEVVADLAQTSFLFSVPVDGPMTFSTPHVSVQWVLRFEFYTTPKF 476
Query: 478 VDWSKYEHPLLIEGRERTEWVLPITVHXXXXXXXXXXXXXEKLFSLDPLWVQ 529
VDW+KYEHPLLIEGRE+TEWVLPITVH EKLFSLDP+WV
Sbjct: 477 VDWTKYEHPLLIEGREKTEWVLPITVHAPPPRTPTSGSRNEKLFSLDPMWVH 528
>Medtr8g009530.1 | Rgp1 protein | HC | chr8:2234813-2244988 |
20130731
Length = 529
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/532 (78%), Positives = 455/532 (85%), Gaps = 7/532 (1%)
Query: 1 MLQGRLSFFGGGDSRLVDNNSSKGEPLVPTLKLETDKQVYRPGDPVVVTIQISNPSNGYS 60
ML+GRLSFFGGGDS L+D NSSK E +VPTLKLETDKQVYRPGDPV++TIQISNPSNGYS
Sbjct: 1 MLKGRLSFFGGGDSGLLDKNSSKNEEIVPTLKLETDKQVYRPGDPVIITIQISNPSNGYS 60
Query: 61 FLMERLSFEIKGIEKLDTQWFATQKPLPGSKQRRGEHVFLDCSCPILVANQIVNAGTSKS 120
FLMERLSFEI+GIEKLDTQWFATQKPLPGS+QRRGEHVF+D S PILVANQI+NAGTSKS
Sbjct: 61 FLMERLSFEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQIINAGTSKS 120
Query: 121 YVVRTLLPSIIPPSYKGSNIRYLYYVKSAVTGGWLILENGQSHAETSNDVTDLDVRIPLQ 180
YVVRT+LPSIIPPSYKGSNIRYLYYVKSA+TGGWLILENGQS E +NDVTDL+VRIPLQ
Sbjct: 121 YVVRTMLPSIIPPSYKGSNIRYLYYVKSAITGGWLILENGQSRTEPTNDVTDLEVRIPLQ 180
Query: 181 VWINQKSSGFPTDEDIVPLTTVQPDIFWKEMDGDADWVRANDFYDGIEEGYXXXXXXXXX 240
+W+NQKSSGFP D+DIVPLTTVQ DIFWKEMDGDADWVRAND YDG+E+GY
Sbjct: 181 IWVNQKSSGFPLDDDIVPLTTVQLDIFWKEMDGDADWVRANDIYDGVEDGYDSSRDDISS 240
Query: 241 XXXYNPSKENLHXXXXXXXXXXXXXXXXXXXXXXXXEIHRTSLSSNMALPRLSVA--VSD 298
YNP KEN+ E HRTSLSSN+ALPRLSVA +SD
Sbjct: 241 VSSYNPMKENM----VRGFGSSLSLRSSSARSLNRLEGHRTSLSSNIALPRLSVAEVLSD 296
Query: 299 PGADVLSTQKSFGIVSPSDQQQFRKPFSADDDAGVSSSPEAG-AESLSSEGFIRGKSYNI 357
GAD LSTQKSF +VSP++QQ+F K FSA+DDAGVSSSPEAG ESLSSEGFIRG+SYNI
Sbjct: 297 TGADALSTQKSFTMVSPTEQQKFGKQFSAEDDAGVSSSPEAGPVESLSSEGFIRGRSYNI 356
Query: 358 RLDDQVLLKFSPKNSDSTHYFSDVIGGTLTFFHEEGARRCLEISVTLETSETINRRFVHP 417
RLDDQVLLKFSPKNSDST+YFSD+IGGTLTFFHE+G RRCLEISVTLETSETINRRFVHP
Sbjct: 357 RLDDQVLLKFSPKNSDSTYYFSDMIGGTLTFFHEQGGRRCLEISVTLETSETINRRFVHP 416
Query: 418 SRRNSPTITKVQSDHHEVVADLVQTSFLFSVPMDGPMSFSTPHVSVQWVLRFEFFTTPKH 477
SRRNSPTITKVQSDHHEVVADL QTSFLFSVP+DGPM+FSTPHVSVQWVLRFEF+TTPK
Sbjct: 417 SRRNSPTITKVQSDHHEVVADLAQTSFLFSVPVDGPMTFSTPHVSVQWVLRFEFYTTPKF 476
Query: 478 VDWSKYEHPLLIEGRERTEWVLPITVHXXXXXXXXXXXXXEKLFSLDPLWVQ 529
VDW+KYEHPLLIEGRE+TEWVLPITVH EKLFSLDP+WV
Sbjct: 477 VDWTKYEHPLLIEGREKTEWVLPITVHAPPPRTPTSGSRNEKLFSLDPMWVH 528