Miyakogusa Predicted Gene

Lj3g3v0599570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0599570.1 Non Characterized Hit- tr|B9RUR2|B9RUR2_RICCO 60S
ribosomal protein L37a, putative OS=Ricinus
commun,85.29,3.00004e-41,no description,Ribosomal protein L37ae/L37e,
N-terminal; Ribosomal_L37ae,Ribosomal protein L37ae; Zn,CUFF.41025.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0199s0040.1 | 60S ribosomal protein L37a-2 | LC | scaffold0...   185   1e-47
Medtr8g007485.1 | 60S ribosomal protein L37a-2 | HC | chr8:15704...   175   9e-45
Medtr4g103340.1 | 60S ribosomal protein L37a-2 | HC | chr4:42698...   175   9e-45
Medtr4g099160.1 | 60S ribosomal protein L37a-2 | HC | chr4:41070...   175   9e-45
Medtr4g103340.2 | 60S ribosomal protein L37a-2 | HC | chr4:42697...   147   2e-36

>Medtr0199s0040.1 | 60S ribosomal protein L37a-2 | LC |
           scaffold0199:12346-16101 | 20130731
          Length = 173

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 92/97 (94%)

Query: 36  SRASNLPSSPAKMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVK 95
           +R S +P  P KMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVK
Sbjct: 70  TRLSLIPFKPPKMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVK 129

Query: 96  RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR 132
           RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
Sbjct: 130 RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR 166


>Medtr8g007485.1 | 60S ribosomal protein L37a-2 | HC |
           chr8:1570482-1572532 | 20130731
          Length = 92

 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 108 GKVKAGGAYTLNTASAVTVRSTIRR 132
           GKVKAGGAYTLNTASAVTVRSTIRR
Sbjct: 61  GKVKAGGAYTLNTASAVTVRSTIRR 85


>Medtr4g103340.1 | 60S ribosomal protein L37a-2 | HC |
           chr4:42698010-42696336 | 20130731
          Length = 92

 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 108 GKVKAGGAYTLNTASAVTVRSTIRR 132
           GKVKAGGAYTLNTASAVTVRSTIRR
Sbjct: 61  GKVKAGGAYTLNTASAVTVRSTIRR 85


>Medtr4g099160.1 | 60S ribosomal protein L37a-2 | HC |
           chr4:41070752-41073670 | 20130731
          Length = 92

 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 108 GKVKAGGAYTLNTASAVTVRSTIRR 132
           GKVKAGGAYTLNTASAVTVRSTIRR
Sbjct: 61  GKVKAGGAYTLNTASAVTVRSTIRR 85


>Medtr4g103340.2 | 60S ribosomal protein L37a-2 | HC |
           chr4:42697936-42696403 | 20130731
          Length = 72

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 71/72 (98%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 108 GKVKAGGAYTLN 119
           GKVKAGGAYTL 
Sbjct: 61  GKVKAGGAYTLK 72