Miyakogusa Predicted Gene

Lj3g3v0593220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0593220.1 Non Characterized Hit- tr|D8RQG8|D8RQG8_SELML
Putative uncharacterized protein OS=Selaginella moelle,42.61,7e-16,no
description,NULL; SUBFAMILY NOT NAMED,NULL; PAX6 NEIGHBOR PROTEIN
(PAXNEB),NULL; seg,NULL; PAXNEB,CUFF.40998.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g007340.1 | elongator complex protein | HC | chr8:1470311-...   293   4e-80
Medtr8g007340.2 | elongator complex protein | HC | chr8:1470311-...   216   1e-56

>Medtr8g007340.1 | elongator complex protein | HC |
           chr8:1470311-1464807 | 20130731
          Length = 360

 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 147/168 (87%)

Query: 1   MAATXXXXXXXXXXXXTATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIME 60
           MAAT            T TSQN GLKHGPNGTTF+SSGIPDLDKILGGGFSLGSLVMIME
Sbjct: 1   MAATRTRVSSFSRNVSTVTSQNSGLKHGPNGTTFLSSGIPDLDKILGGGFSLGSLVMIME 60

Query: 61  DAEAPHHMLLLRNFMSQGLVHRQPLLYASASRDPKGFLGTLPSPGSSKEDKSRDLGHEKD 120
           DAEAPHHMLLLRN MSQGLVH+QPLLYASASRDPKGFLGTLP+P  +KEDKS+DL +EKD
Sbjct: 61  DAEAPHHMLLLRNLMSQGLVHKQPLLYASASRDPKGFLGTLPAPAPAKEDKSQDLTNEKD 120

Query: 121 LRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNV 168
           LRIAWQYKKYFG+PQ N++SNNG QHDYCN+FDLRKPLDRHF+ GMNV
Sbjct: 121 LRIAWQYKKYFGDPQSNISSNNGAQHDYCNEFDLRKPLDRHFYSGMNV 168


>Medtr8g007340.2 | elongator complex protein | HC |
           chr8:1470311-1464807 | 20130731
          Length = 304

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 105/112 (93%)

Query: 57  MIMEDAEAPHHMLLLRNFMSQGLVHRQPLLYASASRDPKGFLGTLPSPGSSKEDKSRDLG 116
           MIMEDAEAPHHMLLLRN MSQGLVH+QPLLYASASRDPKGFLGTLP+P  +KEDKS+DL 
Sbjct: 1   MIMEDAEAPHHMLLLRNLMSQGLVHKQPLLYASASRDPKGFLGTLPAPAPAKEDKSQDLT 60

Query: 117 HEKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNV 168
           +EKDLRIAWQYKKYFG+PQ N++SNNG QHDYCN+FDLRKPLDRHF+ GMNV
Sbjct: 61  NEKDLRIAWQYKKYFGDPQSNISSNNGAQHDYCNEFDLRKPLDRHFYSGMNV 112