Miyakogusa Predicted Gene

Lj3g3v0582180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0582180.1 tr|B9MUQ8|B9MUQ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589877 PE=3 SV=1,83.02,9e-16,MUTS
HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
no description,NULL; DNA ,gene.g45678.t1.1
         (397 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g012900.1 | DNA mismatch repair MSH4-like protein, putativ...   476   e-134
Medtr5g097770.1 | hypothetical protein | HC | chr5:42824927-4282...    86   5e-17
Medtr5g021570.1 | serine carboxypeptidase-like protein | HC | ch...    83   5e-16

>Medtr5g012900.1 | DNA mismatch repair MSH4-like protein, putative |
           HC | chr5:3982230-3989626 | 20130731
          Length = 556

 Score =  476 bits (1226), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/310 (76%), Positives = 252/310 (81%), Gaps = 17/310 (5%)

Query: 17  QPLKDIETISARLDCLDELMSNEQLFFALCQVLRKFPKETDRVLCHFCFKPKKDTIEALA 76
           QPLKDI+TI+ARLDCLDELM+NEQLFFALCQ LRKFPKETDRVLCHFCFKPKK TIEA++
Sbjct: 217 QPLKDIKTINARLDCLDELMNNEQLFFALCQFLRKFPKETDRVLCHFCFKPKKVTIEAIS 276

Query: 77  VDRAKKSQMLVSSVIXXXXXXXXXXXXSKVLKDAKSSLLSNIYKSVCANEKYDRIKERIG 136
           VDR+KKSQ+LVSSVI            S  LKDAKSSLLSNIYKSVC NEKYD IK+RI 
Sbjct: 277 VDRSKKSQVLVSSVILLKTALDALPLLSMALKDAKSSLLSNIYKSVCENEKYDLIKKRIE 336

Query: 137 EIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRSFCETSEAIHNLANNYREEFKLP 196
           EIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISR+SFCETSEAIHNLANNYRE+FKLP
Sbjct: 337 EIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRKSFCETSEAIHNLANNYREDFKLP 396

Query: 197 NLKLIFKNRQGFHFVIPQKNVQGKLPRKFIQ-----------------LNARNKSAAAEC 239
           NLKL FKNRQGFHFVIPQKN+QGKLP KFIQ                 LNARNKSAAAEC
Sbjct: 397 NLKLTFKNRQGFHFVIPQKNIQGKLPNKFIQVVKHGNNIHCSTLELASLNARNKSAAAEC 456

Query: 240 YTRTEVCLEELMDAIRENVSVXXXXXXXXXXXDMIVNSFAHMISTKPVDRYTRPEFTGNT 299
           YTRTEVCLEELMDAIRENVS            DMIVNSFAHMISTKPVD+YTRPEFT N 
Sbjct: 457 YTRTEVCLEELMDAIRENVSALTLLAEILCLLDMIVNSFAHMISTKPVDQYTRPEFTENG 516

Query: 300 PFDLFTPEGP 309
           P  + +   P
Sbjct: 517 PMAIDSGRHP 526


>Medtr5g097770.1 | hypothetical protein | HC |
           chr5:42824927-42820035 | 20130731
          Length = 254

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 47/59 (79%)

Query: 339 RISEKEMRRMKVNCLQYHSIQRAYHVAQRLLCLKYSNQDEDTIRQALRNLKETCLNHKL 397
           R+ ++E +RM VNCLQ HSIQ AYHVAQRLLCLKYSNQ  +TIR AL NLKE C+  KL
Sbjct: 196 RVYKEEKKRMDVNCLQNHSIQSAYHVAQRLLCLKYSNQVGNTIRPALMNLKEYCIKQKL 254


>Medtr5g021570.1 | serine carboxypeptidase-like protein | HC |
           chr5:8344807-8349497 | 20130731
          Length = 397

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query: 339 RISEKEMRRMKVNCLQYHSIQRAYHVAQRLLCLKYSNQDEDTIRQALRNLKETCLNHK 396
           R+ ++E +RM VNCLQ HSIQ AYHVAQR LCLKYSNQ  +TIR AL NLKE C+  K
Sbjct: 187 RVYKEEKKRMDVNCLQNHSIQSAYHVAQRFLCLKYSNQVGNTIRPALMNLKEYCIKQK 244