Miyakogusa Predicted Gene

Lj3g3v0566080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0566080.2 Non Characterized Hit- tr|H3GRN7|H3GRN7_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,26.88,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CRT-like,Chloroquine resistance transporter-related,CUFF.40988.2
         (429 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099780.1 | CRT (chloroquine-resistance transporter)-like ...   457   e-128
Medtr0028s0090.1 | CRT (chloroquine-resistance transporter)-like...   290   2e-78
Medtr5g089340.1 | CRT (chloroquine-resistance transporter)-like ...   273   3e-73
Medtr0028s0090.2 | CRT (chloroquine-resistance transporter)-like...   249   5e-66
Medtr5g089340.2 | CRT (chloroquine-resistance transporter)-like ...   227   2e-59
Medtr5g089340.3 | CRT (chloroquine-resistance transporter)-like ...   205   6e-53

>Medtr3g099780.1 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | chr3:45782380-45789933 |
           20130731
          Length = 422

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/324 (71%), Positives = 249/324 (76%), Gaps = 1/324 (0%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVPMS+YPFFLAQL TFGYV +YFSILYIRYRLGIVTNEMLAIPKWRF +IG
Sbjct: 99  NRVLYKLALVPMSNYPFFLAQLNTFGYVVIYFSILYIRYRLGIVTNEMLAIPKWRFFVIG 158

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
           FLEALG+ SGMSA  +LPGPVIPILNQT+LVWQLMFS L+LRRRYSINQI GCLLVAAGV
Sbjct: 159 FLEALGLVSGMSAGAILPGPVIPILNQTFLVWQLMFSALILRRRYSINQIVGCLLVAAGV 218

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++A++SGSN GQMLSKV+F WPALMIVS AFQAGASIIKEFVF+DS TRLK KSLDIFVV
Sbjct: 219 VIAISSGSNAGQMLSKVDFVWPALMIVSCAFQAGASIIKEFVFLDSSTRLKQKSLDIFVV 278

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NSFGSG                KGIPFVQLPSYLKSGAGCFLNIGA  + C GAPLLPLL
Sbjct: 279 NSFGSGFQALFVLLFLPLISNLKGIPFVQLPSYLKSGAGCFLNIGAGKTGCEGAPLLPLL 338

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPE-ATSLSPFFXXX 405
           Y+VTNLAFNI                          Y+LSLPLPYLPE  T+LSPFF   
Sbjct: 339 YVVTNLAFNISLLNVLKSSSAVVASLMLMLSVPISVYVLSLPLPYLPEGGTTLSPFFLLG 398

Query: 406 XXXXXXXXXXXNTTRPARNSSEID 429
                      NTTRPARNSSE+D
Sbjct: 399 CAILVCGLYTYNTTRPARNSSEVD 422


>Medtr0028s0090.1 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | scaffold0028:25558-37867 |
           20130731
          Length = 432

 Score =  290 bits (743), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/292 (54%), Positives = 193/292 (66%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVP+  YPFFLAQ +TF YV VYFSILYIRYR GIVT+EMLA+PK  FLI+G
Sbjct: 106 NRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPKTPFLIVG 165

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEALG A+GM+A  ML G  IPIL+QT+LVWQ++ ST+ L RRY +NQ+ GC LVA GV
Sbjct: 166 LLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGCFLVAIGV 225

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++ V SGS  G+ L +   FW  LM+VS  FQA  +++KE +F D+  +LK  SLD+FVV
Sbjct: 226 IITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLKGGSLDLFVV 285

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NSFGS                  GIPF QLP+YLK GA CFLNIG  +S C GAPLLPLL
Sbjct: 286 NSFGSAFQALFICLLLPFLSKLWGIPFSQLPNYLKDGAACFLNIGKLSSGCDGAPLLPLL 345

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSL 398
           +I+ N+ FNI                          Y+ +LPLPYL  A+SL
Sbjct: 346 FIIVNMGFNISLLHLLKISSAVVSCLATTVAVPISIYMFTLPLPYLGVASSL 397


>Medtr5g089340.1 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | chr5:38832701-38826925 |
           20130731
          Length = 437

 Score =  273 bits (697), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/296 (49%), Positives = 188/296 (63%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVP+  YPFFLAQL+TFGYV VYF I+YIR+R GIVT+EML++PK  F++IG
Sbjct: 110 NRVLYKLALVPLKQYPFFLAQLSTFGYVIVYFGIMYIRHRAGIVTDEMLSLPKTPFVVIG 169

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEAL  A+GM+A  +L G  IPIL+QT+LVWQ++ S + L RRY +N + GC LV  GV
Sbjct: 170 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNHLLGCFLVTIGV 229

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++ V SG + G  L     FW  LMIVS   QA  +++KE +F+D+  +LK  S+D+FVV
Sbjct: 230 VVTVASGPDAGNSLKDGGLFWSLLMIVSFLLQAADTVLKELIFLDANKKLKGGSVDLFVV 289

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NS+GS                  G+PF QLP+YLK GA CFLN+G  +S C GAPLLPLL
Sbjct: 290 NSYGSAFQALFICLLLPFLSKLWGVPFSQLPNYLKDGAACFLNVGTLSSGCDGAPLLPLL 349

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSLSPFF 402
           +I+ N+ FNI                          Y+ +L LPYL  A+SL   F
Sbjct: 350 FIIVNIGFNIALLHLLKISSAVVSCLASTFSVPISIYVFTLQLPYLGVASSLPTGF 405


>Medtr0028s0090.2 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | scaffold0028:25558-37826 |
           20130731
          Length = 345

 Score =  249 bits (635), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 163/229 (71%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVP+  YPFFLAQ +TF YV VYFSILYIRYR GIVT+EMLA+PK  FLI+G
Sbjct: 106 NRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPKTPFLIVG 165

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEALG A+GM+A  ML G  IPIL+QT+LVWQ++ ST+ L RRY +NQ+ GC LVA GV
Sbjct: 166 LLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGCFLVAIGV 225

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++ V SGS  G+ L +   FW  LM+VS  FQA  +++KE +F D+  +LK  SLD+FVV
Sbjct: 226 IITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLKGGSLDLFVV 285

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTS 335
           NSFGS                  GIPF QLP+YLK GA CFLNIG  +S
Sbjct: 286 NSFGSAFQALFICLLLPFLSKLWGIPFSQLPNYLKDGAACFLNIGKLSS 334


>Medtr5g089340.2 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | chr5:38831970-38826925 |
           20130731
          Length = 324

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/266 (46%), Positives = 163/266 (61%)

Query: 133 YVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIGFLEALGVASGMSAAVMLPGPVIPILN 192
           YV VYF I+YIR+R GIVT+EML++PK  F++IG LEAL  A+GM+A  +L G  IPIL+
Sbjct: 23  YVIVYFGIMYIRHRAGIVTDEMLSLPKTPFVVIGLLEALAAATGMAAGAILSGASIPILS 82

Query: 193 QTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGVLMAVTSGSNTGQMLSKVEFFWPALMI 252
           QT+LVWQ++ S + L RRY +N + GC LV  GV++ V SG + G  L     FW  LMI
Sbjct: 83  QTFLVWQILLSIIFLGRRYKVNHLLGCFLVTIGVVVTVASGPDAGNSLKDGGLFWSLLMI 142

Query: 253 VSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVVNSFGSGXXXXXXXXXXXXXXXXKGIP 312
           VS   QA  +++KE +F+D+  +LK  S+D+FVVNS+GS                  G+P
Sbjct: 143 VSFLLQAADTVLKELIFLDANKKLKGGSVDLFVVNSYGSAFQALFICLLLPFLSKLWGVP 202

Query: 313 FVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTNLAFNIXXXXXXXXXXXXXXXX 372
           F QLP+YLK GA CFLN+G  +S C GAPLLPLL+I+ N+ FNI                
Sbjct: 203 FSQLPNYLKDGAACFLNVGTLSSGCDGAPLLPLLFIIVNIGFNIALLHLLKISSAVVSCL 262

Query: 373 XXXXXXXXXXYILSLPLPYLPEATSL 398
                     Y+ +L LPYL  A+SL
Sbjct: 263 ASTFSVPISIYVFTLQLPYLGVASSL 288


>Medtr5g089340.3 | CRT (chloroquine-resistance transporter)-like
           transporter, putative | HC | chr5:38832701-38826925 |
           20130731
          Length = 336

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 137/185 (74%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVP+  YPFFLAQL+TFGYV VYF I+YIR+R GIVT+EML++PK  F++IG
Sbjct: 110 NRVLYKLALVPLKQYPFFLAQLSTFGYVIVYFGIMYIRHRAGIVTDEMLSLPKTPFVVIG 169

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEAL  A+GM+A  +L G  IPIL+QT+LVWQ++ S + L RRY +N + GC LV  GV
Sbjct: 170 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNHLLGCFLVTIGV 229

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++ V SG + G  L     FW  LMIVS   QA  +++KE +F+D+  +LK  S+D+FVV
Sbjct: 230 VVTVASGPDAGNSLKDGGLFWSLLMIVSFLLQAADTVLKELIFLDANKKLKGGSVDLFVV 289

Query: 287 NSFGS 291
           NS+GS
Sbjct: 290 NSYGS 294