Miyakogusa Predicted Gene

Lj3g3v0566030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0566030.1 Non Characterized Hit- tr|Q9AYE2|Q9AYE2_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,59.68,0.000000002,seg,NULL; coiled-coil,NULL; Apt1,FMP27,
C-terminal; SUBFAMILY NOT NAMED,NULL; ANTIGEN
MLAA-22-RELAT,CUFF.40981.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099880.1 | localization and RNA pol II promoter Fmp27 dom...   258   2e-69
Medtr5g066650.1 | localization and RNA pol II promoter Fmp27 dom...   232   2e-61

>Medtr3g099880.1 | localization and RNA pol II promoter Fmp27 domain
            protein | HC | chr3:45820368-45850165 | 20130731
          Length = 2624

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/187 (74%), Positives = 147/187 (78%)

Query: 1    MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAXXXXXXXXXXXXXXXXXXXXXXLAKIN 60
            MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPA                      LAKIN
Sbjct: 1954 MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAEDDDDVEEEADEVVPDGVEEVELAKIN 2013

Query: 61   XXXXXXXXXXXXDDIRELSLWCDPSTDLHPEKESDLWMINGGRSMLIQGLKRELLSAQKS 120
                        DDIR+LSLWCDPS D+HPEKESDLWMI GGRSML+QGLKRELLSAQKS
Sbjct: 2014 LEKREREQKLLLDDIRKLSLWCDPSGDVHPEKESDLWMITGGRSMLVQGLKRELLSAQKS 2073

Query: 121  RKAASVSLRTALQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEIND 180
            RKAA+V+LR ALQKAAQLRL EKE NKSPSYAMRISL+INKVVWSMLVDGKSFAEAEIND
Sbjct: 2074 RKAAAVALRLALQKAAQLRLAEKEMNKSPSYAMRISLEINKVVWSMLVDGKSFAEAEIND 2133

Query: 181  MIYDFDR 187
            + YDFDR
Sbjct: 2134 LKYDFDR 2140


>Medtr5g066650.1 | localization and RNA pol II promoter Fmp27 domain
            protein | HC | chr5:28137001-28113373 | 20130731
          Length = 2613

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/187 (63%), Positives = 133/187 (71%)

Query: 1    MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAXXXXXXXXXXXXXXXXXXXXXXLAKIN 60
            MTSRQFQVMLDVL NLLFARLPKP KSSL+                         LAKIN
Sbjct: 1963 MTSRQFQVMLDVLNNLLFARLPKPPKSSLTLSVEDDENDEEEADEVVPDGVEEVELAKIN 2022

Query: 61   XXXXXXXXXXXXDDIRELSLWCDPSTDLHPEKESDLWMINGGRSMLIQGLKRELLSAQKS 120
                        DD+++LS WCD S    PEKE DLWMI GG +ML+QGLK+EL+SA+KS
Sbjct: 2023 LEKKEREQNLLLDDMKKLSFWCDTSNGKEPEKEQDLWMIYGGIAMLVQGLKKELVSAKKS 2082

Query: 121  RKAASVSLRTALQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEIND 180
            RK A  SLR A++KAAQ+RL EKEKNKSPSYAMR+ LQINKVVWSM++DGKSFAEAEIND
Sbjct: 2083 RKEAYASLRMAMKKAAQVRLMEKEKNKSPSYAMRVILQINKVVWSMILDGKSFAEAEIND 2142

Query: 181  MIYDFDR 187
            MIYDFDR
Sbjct: 2143 MIYDFDR 2149