Miyakogusa Predicted Gene

Lj3g3v0564930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0564930.1 tr|C1MYQ9|C1MYQ9_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_2787,36.59,1e-16,AA_TRNA_LIGASE_II_GLYAB,Glycine-tRNA
synthetase, heterodimeric; DALR_1,DALR anticodon binding;
SUBFA,CUFF.40972.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g006955.1 | glycyl-tRNA synthetase alpha chain/beta chain ...   210   3e-55
Medtr8g006955.3 | glycyl-tRNA synthetase alpha chain/beta chain ...   209   3e-55

>Medtr8g006955.1 | glycyl-tRNA synthetase alpha chain/beta chain | HC
            | chr8:1116488-1133360 | 20130731
          Length = 1079

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/124 (84%), Positives = 115/124 (92%), Gaps = 2/124 (1%)

Query: 1    MEELSKGKLFPKVVEAYSRPTRIVRGKEIEL--HMEVDVAAFETNEERVLWSTFLSVKKS 58
            MEELSKG+LFPKVVEAYSRPTRIVRGKE EL    +VD AAFE NEERVLW+TFLSVKKS
Sbjct: 956  MEELSKGELFPKVVEAYSRPTRIVRGKEDELDGEYQVDEAAFEINEERVLWNTFLSVKKS 1015

Query: 59   INPGIDIDDFVDISSQLVQPLEDFFNNVFVMVDDDKIRENRLALLKGIAELPKGIADLTV 118
            INPG+DIDDFV+ISSQL+QPLEDFFNNVFVMVDD KIR+NRLALLK IA+LPKGIADLT+
Sbjct: 1016 INPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRKNRLALLKEIADLPKGIADLTL 1075

Query: 119  IPGF 122
            +PGF
Sbjct: 1076 LPGF 1079


>Medtr8g006955.3 | glycyl-tRNA synthetase alpha chain/beta chain |
           HC | chr8:1116498-1133360 | 20130731
          Length = 949

 Score =  209 bits (533), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/124 (84%), Positives = 115/124 (92%), Gaps = 2/124 (1%)

Query: 1   MEELSKGKLFPKVVEAYSRPTRIVRGKEIEL--HMEVDVAAFETNEERVLWSTFLSVKKS 58
           MEELSKG+LFPKVVEAYSRPTRIVRGKE EL    +VD AAFE NEERVLW+TFLSVKKS
Sbjct: 826 MEELSKGELFPKVVEAYSRPTRIVRGKEDELDGEYQVDEAAFEINEERVLWNTFLSVKKS 885

Query: 59  INPGIDIDDFVDISSQLVQPLEDFFNNVFVMVDDDKIRENRLALLKGIAELPKGIADLTV 118
           INPG+DIDDFV+ISSQL+QPLEDFFNNVFVMVDD KIR+NRLALLK IA+LPKGIADLT+
Sbjct: 886 INPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRKNRLALLKEIADLPKGIADLTL 945

Query: 119 IPGF 122
           +PGF
Sbjct: 946 LPGF 949