Miyakogusa Predicted Gene

Lj3g3v0563900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0563900.1 tr|H2KW91|H2KW91_ORYSJ RWD domain containing
protein, expressed OS=Oryza sativa subsp. japonica
GN=L,62.5,1e-16,Ring finger,Zinc finger, RING-type; zf-RING_2,Zinc
finger, RING-type; ZF_RING_2,Zinc finger, RING-ty,CUFF.40965.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g027110.1 | RING finger protein | HC | chr5:11244352-11248...   347   1e-95
Medtr8g006950.1 | RING finger protein | HC | chr8:1113826-110843...   339   2e-93

>Medtr5g027110.1 | RING finger protein | HC | chr5:11244352-11248913
           | 20130731
          Length = 249

 Score =  347 bits (889), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 193/232 (83%), Gaps = 3/232 (1%)

Query: 1   MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
           MNHPDGDCPLCLFPLV +D QSETLPFMKLMSCFHCFHSECI RWWNW+Q SK+TGS++S
Sbjct: 1   MNHPDGDCPLCLFPLVTEDHQSETLPFMKLMSCFHCFHSECIIRWWNWIQSSKETGSANS 60

Query: 61  DTATARPNKDSYKKLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXXXXEE 120
           D ATA  N+D+++KL++GVGNCPVCRKPFHAKDLDHVLDLVGSH S +          +E
Sbjct: 61  DNATAHCNRDTHEKLEEGVGNCPVCRKPFHAKDLDHVLDLVGSH-SSTVSLNNDEVDNDE 119

Query: 121 KLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSSTSTKESD- 179
           K+LQS++EIIR+Q+FEAIL++QKE +GLIEPK  +VI PGMYL QPVA P+STSTKE D 
Sbjct: 120 KILQSQHEIIRKQRFEAILSLQKENNGLIEPKKGIVILPGMYLQQPVAVPNSTSTKEPDE 179

Query: 180 -EQQERDPPAVVSGRHDSGTSNRPSSSGNMNYDARRQRGRSYHNSSSTIRQP 230
            EQQERDPPAV SGRH  GTSN PSSSGN N+ ARR R R+ H+SSST R P
Sbjct: 180 IEQQERDPPAVGSGRHVGGTSNGPSSSGNRNFGARRHRPRNDHHSSSTARHP 231



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 227 IRQPVAAPSSASTKESDD--RQERDPPAVVXXXXXXXXXXXXXXXXXXXXXXXXXXARSY 284
           ++QPVA P+S STKE D+  +QERDPPAV                            R+ 
Sbjct: 162 LQQPVAVPNSTSTKEPDEIEQQERDPPAVGSGRHVGGTSNGPSSSGNRNFGARRHRPRND 221

Query: 285 HNSSSTVRHPPRKPV-QQWAMRDNTSSKQ 312
           H+SSST RH PRKPV QQW  RDN S+KQ
Sbjct: 222 HHSSSTARH-PRKPVQQQWVRRDNPSNKQ 249


>Medtr8g006950.1 | RING finger protein | HC | chr8:1113826-1108434 |
           20130731
          Length = 364

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 186/230 (80%), Gaps = 1/230 (0%)

Query: 1   MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
           MNHPDGDCPLCLFPLV +  QSETLPFMKLMSCFHCFHSECI RWWNW+Q SK+TGS+++
Sbjct: 118 MNHPDGDCPLCLFPLVTEGHQSETLPFMKLMSCFHCFHSECIIRWWNWIQSSKETGSANA 177

Query: 61  DTATARPNKDSYKKLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXXXXEE 120
           D AT   N+D+ +KL++GVGNCPVCRKPFHAKDLDHVLDLVGSH S+           +E
Sbjct: 178 DNATVHRNQDNLEKLEEGVGNCPVCRKPFHAKDLDHVLDLVGSHSSR-VSLNNDEVNNDE 236

Query: 121 KLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSSTSTKESDE 180
           K+LQSE EIIR+Q+FEAIL++QKE +GLIEPK D+VI PGMYL QPVAAP+ST   +  E
Sbjct: 237 KILQSENEIIRKQRFEAILSLQKENNGLIEPKKDIVILPGMYLQQPVAAPTSTKEPDEME 296

Query: 181 QQERDPPAVVSGRHDSGTSNRPSSSGNMNYDARRQRGRSYHNSSSTIRQP 230
           QQERDPPAV SGRH  GTSN PSSSGN N  ARR R R+ H+SSST R P
Sbjct: 297 QQERDPPAVGSGRHVGGTSNGPSSSGNRNIGARRNRPRNGHHSSSTARHP 346



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 227 IRQPVAAPSSASTKESDDRQERDPPAVVXXXXXXXXXXXXXXXXXXXXXXXXXXARSYHN 286
           ++QPVAAP+S    +  ++QERDPPAV                            R+ H+
Sbjct: 279 LQQPVAAPTSTKEPDEMEQQERDPPAVGSGRHVGGTSNGPSSSGNRNIGARRNRPRNGHH 338

Query: 287 SSSTVRHPPRKPV-QQWAMRDNTSSKQ 312
           SSST RH PRKPV QQW  RDN S+KQ
Sbjct: 339 SSSTARH-PRKPVQQQWVRRDNPSNKQ 364