Miyakogusa Predicted Gene
- Lj3g3v0527350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0527350.1 tr|D7KV18|D7KV18_ARALL F1N21.14 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_315746 PE=4
SV=1,49.45,1e-17,zf-RanBP,Zinc finger, RanBP2-type; Ran BP2/NZF zinc
finger-like,NULL; Zinc finger domain,Zinc finger,CUFF.40935.1
(244 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g085190.2 | Zn-finger, RanBP-type, containing protein | HC... 164 6e-41
Medtr3g085190.1 | Zn-finger, RanBP-type, containing protein | HC... 164 7e-41
Medtr8g006795.1 | hypothetical protein | LC | chr8:980500-980086... 66 2e-11
Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC ... 49 6e-06
Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC ... 48 9e-06
Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC ... 48 9e-06
>Medtr3g085190.2 | Zn-finger, RanBP-type, containing protein | HC |
chr3:38504666-38500172 | 20130731
Length = 332
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 144/271 (53%), Gaps = 44/271 (16%)
Query: 8 NRGSFGSKRSRNDVSRKDGDWSCPNCGNLNFSFRTVCNRGHCGAPRPP------ITPPAQ 61
NR S SKR+R D SR++ DW+CP+CGN+NFSFRT CN +C PRP P Q
Sbjct: 6 NRNSSASKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQ 65
Query: 62 VMSPYNNGHPQFYYGGVVAPPPLYG----VSSRF-GSPLP--------HSGVQYDYGLYP 108
Y++ P Y G APP +Y S F GSP+P S QY YG
Sbjct: 66 APQAYSSAAP---YLGSNAPPSIYIGAPPYGSLFNGSPVPPYEVPFTGGSAYQYSYGSRV 122
Query: 109 RPRVSYSPI-----PPFLPGSF---GGIAYSPRPKINPYGYGFQSPTWDM----GLVTDN 156
Y P+ P+ G+ GGI P+ ++ YG G M G D+
Sbjct: 123 PAGSPYRPLHLAGPAPYTSGAVVGHGGIYAMPQ-LLDRYGLGVPIGPGAMGTRPGFFRDD 181
Query: 157 SASRKRRGGPDGLSEGDWICPKCDNVNFAFRTNCNMKHCGAPKSG----KSQANT--SIP 210
+ +K GPD + DW CPKC NVNF+FRT CNM+ C PK G KS NT +P
Sbjct: 182 KSQKK---GPDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNTKQKMP 238
Query: 211 EGSWTCKKCGNLNYPFRSVCNRKDCGSEKTA 241
EGSW C+KC N+NYPFR+ CNR++CG++K A
Sbjct: 239 EGSWKCEKCNNINYPFRTKCNRQNCGADKPA 269
>Medtr3g085190.1 | Zn-finger, RanBP-type, containing protein | HC |
chr3:38504666-38500172 | 20130731
Length = 284
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 144/271 (53%), Gaps = 44/271 (16%)
Query: 8 NRGSFGSKRSRNDVSRKDGDWSCPNCGNLNFSFRTVCNRGHCGAPRPP------ITPPAQ 61
NR S SKR+R D SR++ DW+CP+CGN+NFSFRT CN +C PRP P Q
Sbjct: 6 NRNSSASKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQ 65
Query: 62 VMSPYNNGHPQFYYGGVVAPPPLYGVSSRF-----GSPLP--------HSGVQYDYGLYP 108
Y++ P Y G APP +Y + + GSP+P S QY YG
Sbjct: 66 APQAYSSAAP---YLGSNAPPSIYIGAPPYGSLFNGSPVPPYEVPFTGGSAYQYSYGSRV 122
Query: 109 RPRVSYSPI-----PPFLPGSF---GGIAYSPRPKINPYGYGFQSPTWDM----GLVTDN 156
Y P+ P+ G+ GGI P+ ++ YG G M G D+
Sbjct: 123 PAGSPYRPLHLAGPAPYTSGAVVGHGGIYAMPQ-LLDRYGLGVPIGPGAMGTRPGFFRDD 181
Query: 157 SASRKRRGGPDGLSEGDWICPKCDNVNFAFRTNCNMKHCGAPKSG----KSQANT--SIP 210
+ +K GPD + DW CPKC NVNF+FRT CNM+ C PK G KS NT +P
Sbjct: 182 KSQKK---GPDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNTKQKMP 238
Query: 211 EGSWTCKKCGNLNYPFRSVCNRKDCGSEKTA 241
EGSW C+KC N+NYPFR+ CNR++CG++K A
Sbjct: 239 EGSWKCEKCNNINYPFRTKCNRQNCGADKPA 269
>Medtr8g006795.1 | hypothetical protein | LC | chr8:980500-980086 |
20130731
Length = 105
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%)
Query: 201 GKSQANTSIPEGSWTCKKCGNLNYPFRSVCNRKDCGSEKTASA 243
G + S PEGSWTCKKCGNLNYPFRS+CNR+ C SEK A A
Sbjct: 62 GTKEPKRSDPEGSWTCKKCGNLNYPFRSICNRRVCRSEKIAFA 104
>Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC |
chr8:32132441-32128798 | 20130731
Length = 278
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 171 EGDWICPKCDNVNFAFRTNCNMKHCGAPK---SGKSQANTS-IPE-GSWTCKKCGNLNYP 225
EGDW C C+N N+AFR+ CN C P+ K+ A++ +P G W C C N NY
Sbjct: 6 EGDWECSGCNNRNYAFRSFCN--RCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYA 63
Query: 226 FRSVCNRKDCGSEKTASA 243
R C K CG K +A
Sbjct: 64 SREKC--KKCGQPKEVAA 79
>Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC |
chr8:32132441-32128798 | 20130731
Length = 325
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 171 EGDWICPKCDNVNFAFRTNCNMKHCGAPK---SGKSQANTS-IPE-GSWTCKKCGNLNYP 225
EGDW C C+N N+AFR+ CN C P+ K+ A++ +P G W C C N NY
Sbjct: 6 EGDWECSGCNNRNYAFRSFCN--RCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYA 63
Query: 226 FRSVCNRKDCGSEKTASA 243
R C K CG K +A
Sbjct: 64 SREKC--KKCGQPKEVAA 79
>Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC |
chr8:32132441-32128798 | 20130731
Length = 316
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 171 EGDWICPKCDNVNFAFRTNCNMKHCGAPK---SGKSQANTS-IPE-GSWTCKKCGNLNYP 225
EGDW C C+N N+AFR+ CN C P+ K+ A++ +P G W C C N NY
Sbjct: 6 EGDWECSGCNNRNYAFRSFCN--RCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYA 63
Query: 226 FRSVCNRKDCGSEKTASA 243
R C K CG K +A
Sbjct: 64 SREKC--KKCGQPKEVAA 79