Miyakogusa Predicted Gene

Lj3g3v0525170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0525170.1 Non Characterized Hit- tr|I1HV22|I1HV22_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,57.89,3e-19,seg,NULL,CUFF.40927.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g102340.1 | transmembrane protein, putative | HC | chr7:41...    93   7e-20
Medtr3g018660.1 | transmembrane protein, putative | HC | chr3:51...    51   3e-07

>Medtr7g102340.1 | transmembrane protein, putative | HC |
          chr7:41305362-41304558 | 20130731
          Length = 81

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 49/79 (62%)

Query: 8  ASIDERKFWGWLLXXXXXXXXXXXXXXXXXXKLLPPSQIAMISAMQNDWYYCFLVPLTIP 67
          +S DE K WG  L                  KLLPPSQI +I + QNDWYYCFLVPLT+P
Sbjct: 3  SSFDETKLWGCFLVSIGSIFFAGYFFLALFSKLLPPSQIPLIPSFQNDWYYCFLVPLTLP 62

Query: 68 ILFVAVYFHWLSMKLFKHA 86
          I  V VYFHWLSMK FKHA
Sbjct: 63 IFVVVVYFHWLSMKTFKHA 81


>Medtr3g018660.1 | transmembrane protein, putative | HC |
          chr3:5129005-5128735 | 20130731
          Length = 52

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 25/26 (96%)

Query: 61 LVPLTIPILFVAVYFHWLSMKLFKHA 86
          LVPLT+PI+ VAVYFHWLSMK+FKHA
Sbjct: 27 LVPLTLPIIVVAVYFHWLSMKMFKHA 52