Miyakogusa Predicted Gene
- Lj3g3v0525150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0525150.1 tr|B9GP56|B9GP56_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551949 PE=4
SV=1,77.59,2e-18,FKBP_C,Peptidyl-prolyl cis-trans isomerase,
FKBP-type, domain; seg,NULL; FKBP-like,NULL; FKBP_PPIASE,CUFF.40925.1
(246 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g006755.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 347 7e-96
Medtr4g068190.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 66 3e-11
Medtr7g006570.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 66 3e-11
Medtr5g008680.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 61 9e-10
Medtr8g080980.1 | peptidyl-prolyl cis-trans isomerase FKBP62-lik... 61 1e-09
Medtr1g061080.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 61 1e-09
Medtr8g091410.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 61 1e-09
Medtr4g094785.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 60 2e-09
Medtr7g053470.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 57 1e-08
Medtr4g032680.2 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 55 5e-08
Medtr8g012340.1 | peptidyl-prolyl cis-trans isomerase FKBP62-lik... 55 7e-08
Medtr8g107010.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 54 2e-07
Medtr4g032680.4 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 53 2e-07
Medtr4g032680.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 53 2e-07
Medtr4g032680.3 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 53 3e-07
Medtr7g006570.2 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 49 6e-06
>Medtr8g006755.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr8:920971-928573 | 20130731
Length = 470
Score = 347 bits (889), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 173/241 (71%), Positives = 191/241 (79%), Gaps = 6/241 (2%)
Query: 6 LNFPFSVQGTIFSQRKQLTHRYTNQKSEEYPVQDSCIXXXXXXXXXXXXXXXXXXTGVFP 65
L F +VQG S TH TNQK ++ VQD+ I T VFP
Sbjct: 236 LKFLCTVQGQGHS-----THGCTNQKPKDSIVQDNSILHPEKVLRRKLALSVLVSTCVFP 290
Query: 66 TLSSYGKTKGINPFNEKRLLQQNKQIQKANYAPEDFPNFIREGFEVKVISSENYIKCDSG 125
TLSS+ KTK +NP+NEKR+LQQN+ IQK N AP+DFPNFIREGFEVKV++ +NYI DSG
Sbjct: 291 TLSSHAKTKNMNPYNEKRVLQQNRNIQKQNNAPDDFPNFIREGFEVKVVAPDNYITRDSG 350
Query: 126 LIYRDFEVGKGDCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPGFEEG 185
LIYRDFEVG+GDCPKDGQQVTFHY GYNESGRRIDSTYLQGSPAKIRMG KALVPGFEEG
Sbjct: 351 LIYRDFEVGEGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEG 410
Query: 186 IKDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLGIQNCERRTVLAFYSDVVC 245
I+DMR GGKRRIIIPP+LGPPVGPSTFFS+KQFEVFDVELL IQNCERRT+ FYSDVVC
Sbjct: 411 IRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTI-GFYSDVVC 469
Query: 246 N 246
N
Sbjct: 470 N 470
>Medtr4g068190.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:25566272-25563052 | 20130731
Length = 229
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 94 ANYAPEDFPNFIREGFEVKVISSENYIKCDSGLIYRDFEVGKGDCPKDGQQVTFHYTGYN 153
A PE+ P +G K + + + +SGL Y+D +VG+G P G QV +Y
Sbjct: 83 AGLPPEEKPKLC-DGTCEKELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMV 141
Query: 154 ESGRRIDSTYLQGSPAKIRMGTKALVPGFEEGIKDMRPGGKRRIIIPPELGPPVG 208
SG+ DS+ +G R+G+ ++ G +EG+ M+ GGKRR+ IP L P G
Sbjct: 142 PSGQIFDSSLEKGQLYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGSLAFPKG 196
>Medtr7g006570.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr7:752211-756734 | 20130731
Length = 240
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 32/143 (22%)
Query: 118 NYIKCDSGLIYRDFEVGKGDCPKDGQQVTFHYTGYN--------ESGRRIDSTYLQGSPA 169
+Y++ +SGL Y+D G G PK G+ V + GY E+ + +G
Sbjct: 95 DYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDK 154
Query: 170 ---KIRMGTKALVPGFEEGIKDMRPGGKRRIIIPPELGPPVG--------PSTFFSAKQF 218
K ++G+ ++P FEE + M GG RRII+PPELG P P+TF +
Sbjct: 155 DFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRAL 214
Query: 219 E-------------VFDVELLGI 228
+ +FD+EL+ I
Sbjct: 215 DFVLRNQGLIDKTLLFDIELMKI 237
>Medtr5g008680.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr5:1867881-1872859 | 20130731
Length = 502
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 124 SGLIYRDFEVGKGDCPKD--GQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPG 181
+GL+ D +GK D + G++V+ YTG + +I + +P K R+G ++ G
Sbjct: 393 NGLVIEDISMGKPDGKRADLGKKVSVKYTGKLQKDGKIFDSCAGKAPFKFRLGVGQVIKG 452
Query: 182 FEEGIKDMRPGGKRRIIIPPELGPPVGPSTFFSAKQ--FEVFDVELLGIQ 229
++ G+ MR G KRR+ IPP +G G S Q + VFDVEL+G++
Sbjct: 453 WDVGVNGMRVGDKRRLTIPPSMG--YGDKRVGSIPQNSWLVFDVELVGVE 500
>Medtr8g080980.1 | peptidyl-prolyl cis-trans isomerase FKBP62-like
protein | HC | chr8:34977709-34974074 | 20130731
Length = 570
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 124 SGLIYRDFEVGKG-DCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPGF 182
+GL + + G+G + P +G QV HYTG G + DS+ +G+ K ++G ++ G+
Sbjct: 37 NGLKKKLVKEGEGWETPDNGDQVEVHYTGILLDGTKFDSSRDRGTTFKFKLGQGQVIKGW 96
Query: 183 EEGIKDMRPGGKRRIIIPPELG------PPVGPSTFFSAKQFEVFDVELL 226
+EGIK M+ G IPPEL PP P +A Q FDVELL
Sbjct: 97 DEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPN--AALQ---FDVELL 141
>Medtr1g061080.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr1:26643446-26642061 | 20130731
Length = 218
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 33/139 (23%)
Query: 125 GLIYRDFEVGKGDCPKDGQQVTFHYTG--YNESGRRIDSTYLQG------SPAKIRMGTK 176
G+ + VG G+ P+DG QV HY G + G R DSTY +P +G+
Sbjct: 79 GVKALELLVGSGEVPQDGDQVEIHYYGRLAAKQGWRFDSTYDHKDENGDPNPFVFVLGSG 138
Query: 177 ALVPGFEEGIKDMRPGGKRRIIIPPELG------PPVGPSTFFSAKQFE----------- 219
++ G + ++ M+ GG RR++IPP LG P+ P+ F + F
Sbjct: 139 KVIAGIDVAVRSMKVGGIRRVVIPPSLGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANG 198
Query: 220 --------VFDVELLGIQN 230
+FD+EL+G+++
Sbjct: 199 EGSTLGTLIFDIELVGLRH 217
>Medtr8g091410.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr8:38123529-38126176 | 20130731
Length = 213
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 118 NYIKCDSGLIYRDFEVGKGDCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKA 177
NY+K SGL Y D+ G GD G+ + HYT G DS+Y + P +R+G
Sbjct: 86 NYVK--SGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGK 143
Query: 178 LVPGFE------EGIKDMRPGGKRRIIIPPELGPPVGPSTFFS------AKQFEVFDVEL 225
++ G + EG+ MR GGKR++ IPP L P+ FS ++D++
Sbjct: 144 VIRGLDQGILGGEGVPPMRIGGKRKLTIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKF 203
Query: 226 LGIQNCER 233
+G+ + R
Sbjct: 204 VGLYSGNR 211
>Medtr4g094785.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:38997044-38999561 | 20130731
Length = 240
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 124 SGLIYRDFEVGKGDCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPGF- 182
SGL Y D VG G GQ + HY G E+G+ DS+Y +G P R+G ++ G+
Sbjct: 123 SGLSYCDKVVGYGPQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWD 182
Query: 183 -----EEGIKDMRPGGKRRIIIPPELG 204
++GI M GGKR + +PPE G
Sbjct: 183 VGILGDDGIPPMLTGGKRTLKLPPEFG 209
>Medtr7g053470.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr7:18851017-18844062 | 20130731
Length = 544
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 123 DSGLIYRDFEVGKG-DCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPG 181
D GL + ++G+G D P+ G +V HYTG G + DS+ + SP +G ++ G
Sbjct: 32 DRGLKKKLLKLGEGWDTPESGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIQG 91
Query: 182 FEEGIKDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 226
++EGIK M+ G IPPEL P + P+ FDVE+L
Sbjct: 92 WDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQ------FDVEML 137
>Medtr4g032680.2 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:11270751-11281182 | 20130731
Length = 661
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 124 SGLIYRDFEVGK--GDCPKDGQQVTFHYTG-YNESGRRIDSTYLQGSPAKIRMGTKALVP 180
+GL+ ++ E GK G G++++ +YTG E+G ++S + +P K R+G ++
Sbjct: 553 NGLVIQELETGKENGKIAAIGKKISINYTGKLKENGVVVESNAGE-APFKFRLGKGEVIE 611
Query: 181 GFEEGIKDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLGIQ 229
G++ G++ MR G KRR+++PP + G S + V+D EL+ +
Sbjct: 612 GWDIGLEGMRVGEKRRLVVPPSMTSKKDGESENIPPNSWLVYDFELVKVH 661
>Medtr8g012340.1 | peptidyl-prolyl cis-trans isomerase FKBP62-like
protein | HC | chr8:3497984-3493093 | 20130731
Length = 575
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 137 DCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIRMGTKALVPGFEEGIKDMRPGGKRR 196
D P G +V HYTG G + DS+ +G+ +G ++ G++EGIK M+ G
Sbjct: 53 DTPDVGDEVHVHYTGTLLDGTKFDSSRDRGTTFNFTLGQGQVIKGWDEGIKTMKKGENAL 112
Query: 197 IIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 226
IPPEL P + P+ FDVELL
Sbjct: 113 FTIPPELAYGESGSPPTIPPNATLQ------FDVELL 143
>Medtr8g107010.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr8:45206393-45207788 | 20130731
Length = 256
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 114 ISSENYIKCDSGLIYRDFEVGKGDCPKDGQQVTFHYTGYNESGRRIDSTYLQGSPAKIR- 172
+ E + +G+ Y + ++G GD P+ G V G ES + +G +
Sbjct: 126 VEEEKEVILPNGIRYYELKIGGGDMPRRGDLVVIDIMGKVESTGEVFVNTFEGDKKALAL 185
Query: 173 -MGT----KALVPGFEEGIKDMRPGGKRRIIIPPELG 204
MG+ K + G E IK M+ GGKR++I+PPELG
Sbjct: 186 VMGSRPYSKGVCEGIEYVIKSMKAGGKRKVIVPPELG 222
>Medtr4g032680.4 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:11270751-11280772 | 20130731
Length = 870
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 124 SGLIYRDFEVGK--GDCPKDGQQVTFHYTG-YNESGRRIDSTYLQGSPAKIRMGTKALVP 180
+GL+ ++ E GK G G++++ +YTG E+G ++S + +P K R+G ++
Sbjct: 762 NGLVIQELETGKENGKIAAIGKKISINYTGKLKENGVVVESNAGE-APFKFRLGKGEVIE 820
Query: 181 GFEEGIKDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLGIQ 229
G++ G++ MR G KRR+++PP + G S + V+D EL+ +
Sbjct: 821 GWDIGLEGMRVGEKRRLVVPPSMTSKKDGESENIPPNSWLVYDFELVKVH 870
>Medtr4g032680.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:11270751-11280772 | 20130731
Length = 870
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 124 SGLIYRDFEVGK--GDCPKDGQQVTFHYTG-YNESGRRIDSTYLQGSPAKIRMGTKALVP 180
+GL+ ++ E GK G G++++ +YTG E+G ++S + +P K R+G ++
Sbjct: 762 NGLVIQELETGKENGKIAAIGKKISINYTGKLKENGVVVESNAGE-APFKFRLGKGEVIE 820
Query: 181 GFEEGIKDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLGIQ 229
G++ G++ MR G KRR+++PP + G S + V+D EL+ +
Sbjct: 821 GWDIGLEGMRVGEKRRLVVPPSMTSKKDGESENIPPNSWLVYDFELVKVH 870
>Medtr4g032680.3 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr4:11270751-11281163 | 20130731
Length = 761
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 124 SGLIYRDFEVGK--GDCPKDGQQVTFHYTG-YNESGRRIDSTYLQGSPAKIRMGTKALVP 180
+GL+ ++ E GK G G++++ +YTG E+G ++S + +P K R+G ++
Sbjct: 653 NGLVIQELETGKENGKIAAIGKKISINYTGKLKENGVVVESNAGE-APFKFRLGKGEVIE 711
Query: 181 GFEEGIKDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLGIQ 229
G++ G++ MR G KRR+++PP + G S + V+D EL+ +
Sbjct: 712 GWDIGLEGMRVGEKRRLVVPPSMTSKKDGESENIPPNSWLVYDFELVKVH 761
>Medtr7g006570.2 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr7:752211-756734 | 20130731
Length = 198
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 118 NYIKCDSGLIYRDFEVGKGDCPKDGQQVTFHYTGYN--------ESGRRIDSTYLQGSPA 169
+Y++ +SGL Y+D G G PK G+ V + GY E+ + +G
Sbjct: 95 DYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDK 154
Query: 170 ---KIRMGTKALVPGFEEGIKDMRPGGKRRIII 199
K ++G+ ++P FEE + M GG RR I
Sbjct: 155 DFFKFKVGSHEVIPAFEEAVAGMSLGGIRRCCI 187