Miyakogusa Predicted Gene

Lj3g3v0515090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0515090.1 Non Characterized Hit- tr|B9RD22|B9RD22_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,53.62,0.0000000000005, ,CUFF.40921.1
         (76 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g005155.1 | transcription termination factor family protei...   102   6e-23
Medtr7g080620.1 | transcription termination factor family protei...    73   5e-14
Medtr7g093000.1 | transcription termination factor family protei...    48   2e-06

>Medtr8g005155.1 | transcription termination factor family protein
          | HC | chr8:75123-77422 | 20130731
          Length = 564

 Score =  102 bits (255), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/82 (67%), Positives = 65/82 (79%), Gaps = 7/82 (8%)

Query: 1  MKTMLF---IRHFCS--STTSNLSKK--PSRYKKVVLVQAQQAITDYLHSTRSIPYAHAD 53
          MK ML     RHFCS  +TT N SKK  P RYKK+V+ QAQ+A+T+YLHSTRSIPYA AD
Sbjct: 1  MKVMLLNNLKRHFCSNITTTLNSSKKEIPCRYKKLVVSQAQKALTEYLHSTRSIPYAFAD 60

Query: 54 QIAKNSLLTLTNLISKLGSFTP 75
          QI+KNS  +L+NLISKLGSF+P
Sbjct: 61 QISKNSFHSLSNLISKLGSFSP 82


>Medtr7g080620.1 | transcription termination factor family protein |
           HC | chr7:30698662-30694614 | 20130731
          Length = 737

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 6/79 (7%)

Query: 2   KTMLFI--RHFCSSTTSN---LSKKPSRYKKVVLVQAQQAITDYLHSTRSIPYAHADQIA 56
           + M F   RHF ++T +N   LSK P +++  V+ +AQ+A+TDYLH+T+SIP+ +A+ I 
Sbjct: 25  RAMFFFLHRHFSTTTKTNFPNLSKIPIKHRNHVIYEAQKALTDYLHNTKSIPFTYAEHIG 84

Query: 57  KNSLLTLTNLISKLGSFTP 75
            N+  +LTNLISK+ +F+P
Sbjct: 85  NNTFCSLTNLISKV-NFSP 102


>Medtr7g093000.1 | transcription termination factor family protein
          | HC | chr7:36920060-36916504 | 20130731
          Length = 571

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 18 LSKKPSRYKKVVLVQAQQAITDYLHSTRSIPYAHADQIAKNSLLTLTNLISK 69
          L+ KP    K+ + +AQ A+ +YLHSTRS+ +  AD + KNS   L NL+ K
Sbjct: 37 LNSKPKILSKLTIKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVHK 88