Miyakogusa Predicted Gene
- Lj3g3v0478170.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0478170.1 Non Characterized Hit- tr|H2YXV1|H2YXV1_CIOSA
Uncharacterized protein OS=Ciona savignyi GN=Csa.9450
,39.29,2e-16,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition motif
domain; PWI,Splicing factor PWI; no descri,CUFF.41007.1
(689 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 805 0.0
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 697 0.0
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 484 e-136
Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 367 e-101
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3... 79 2e-14
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3... 79 2e-14
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3... 79 2e-14
Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3... 78 2e-14
Medtr4g094260.1 | polyadenylate-binding protein II | HC | chr4:3... 71 3e-12
Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 3e-11
Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 3e-11
Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 5e-07
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 7e-07
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 7e-07
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 7e-07
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 7e-07
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 5e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 50 7e-06
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/686 (62%), Positives = 496/686 (72%), Gaps = 13/686 (1%)
Query: 1 MGSI-DRSDRRKFRTDFTAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKD 59
MGS+ +R D R + +FT +G A LRE V EKLKEFMG+YTDDTLVEYVIV+LRNG+ K+
Sbjct: 1 MGSVVERDDNRIIKMNFTMDGAAKLRESVTEKLKEFMGEYTDDTLVEYVIVILRNGKSKE 60
Query: 60 QAKNELNVFLGDDSDSFVAWLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQH 119
QAKNELNVFLGDDSDSFV+WLWDHL LN+ LYV+ ++LQDEAPKRKLISE++AG DG QH
Sbjct: 61 QAKNELNVFLGDDSDSFVSWLWDHLHLNLALYVKPEKLQDEAPKRKLISEIKAGDDGLQH 120
Query: 120 LNSQSERVESNKLSRSRRNKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQ 179
S+ ER SNK SRSR NKDWKGLV + EAP + + EVDN H+EEK RS VNR R
Sbjct: 121 SKSELERGNSNKFSRSRHNKDWKGLVKGEAEAPTIRSFEVDNAHVEEKVRSNVNRSRRSP 180
Query: 180 SPPSPVQRKRRRSVDQQKTKRDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXX 239
SP VQRKR R+ +QQ+ KRD SQV I APRRLLQFAVRDAV + R GT VE
Sbjct: 181 SPKPAVQRKRGRADEQQRPKRDVVSQVNIAAPRRLLQFAVRDAVGSPRTSGVGTSVEPYL 240
Query: 240 XXXXXXXXXXXXXXXXXEHPQRMQ-TTRVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRL 298
EH QR+Q T+R N + V+KAV EAAED VK K SGSVFDRL
Sbjct: 241 KRLRSVVSTSSADSSVVEHYQRVQPTSRAPNAMARVIKAVAEAAED-VKSKSSGSVFDRL 299
Query: 299 GCNINRSDGNRKLDDDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFLSDSTSDDEG 358
GC ++ S N +L DYQHQEQ+Q +YLQRTDY QYA N + + ET FLSDS SD+EG
Sbjct: 300 GCGMDSSADNSQL--DYQHQEQNQSMYLQRTDYNGQYAANTTMVERETVFLSDSNSDNEG 357
Query: 359 FDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDENVSLERNRDQEQSAVTPNT 418
DVNV+G V+ S++ SS GN+G DSLMV YSVAK D+++ L+++++QEQ N
Sbjct: 358 CHDVNVIGRGVTGTSEISSSVGNKGSDSLMVQYSVAKKADDSLRLKQSQEQEQPTAACNP 417
Query: 419 S-KIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGAPRSDPRLVKENARALKT 477
S KIVNISVNVNTWKP Q QEPR+V ELDG K ++ IG RS+ +LVKENA ALK
Sbjct: 418 SRKIVNISVNVNTWKPD---QYQEPREVVELDGHKISDNEIGDSRSNMQLVKENANALKI 474
Query: 478 NHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNK 537
++GNVN D++K KA T G S AG ED DSRTIF SNVHFAATKD LSRHFNK
Sbjct: 475 SNGNVNLAPDVQKESSKAH-CTPGSSVAGRPTEDVDSRTIFVSNVHFAATKDALSRHFNK 533
Query: 538 FGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKVVRKSAAP--Q 595
FGEVLKV+IVTDA TGQPKGAAYVEFM KEAADNALSLDGTSFMSRILKVV+KSAAP Q
Sbjct: 534 FGEVLKVIIVTDAATGQPKGAAYVEFMLKEAADNALSLDGTSFMSRILKVVKKSAAPAQQ 593
Query: 596 EYAPALPWPRGVRGSPFPSARFSRAPFPRGVVGAFSPRPPVKFGSRSLQWKRDAQGIXXX 655
E AP WP VRGSPFP+ARF R PF RG+ G+F PRPP+K G+RS+QWKRDAQG
Sbjct: 594 ESAPTTTWPH-VRGSPFPTARFPRPPFARGIPGSFRPRPPMKLGARSMQWKRDAQGSPAD 652
Query: 656 XXXXXXXXXXXXPGARGLTYVRTESK 681
P RGLTY+RT SK
Sbjct: 653 SGSSVNSGNFAMPATRGLTYIRTPSK 678
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/589 (63%), Positives = 432/589 (73%), Gaps = 10/589 (1%)
Query: 1 MGSI-DRSDRRKFRTDFTAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKD 59
MGS+ +R D R + +FT +G A LRE V EKLKEFMG+YTDDTLVEYVIV+LRNG+ K+
Sbjct: 1 MGSVVERDDNRIIKMNFTMDGAAKLRESVTEKLKEFMGEYTDDTLVEYVIVILRNGKSKE 60
Query: 60 QAKNELNVFLGDDSDSFVAWLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQH 119
QAKNELNVFLGDDSDSFV+WLWDHL LN+ LYV+ ++LQDEAPKRKLISE++AG DG QH
Sbjct: 61 QAKNELNVFLGDDSDSFVSWLWDHLHLNLALYVKPEKLQDEAPKRKLISEIKAGDDGLQH 120
Query: 120 LNSQSERVESNKLSRSRRNKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQ 179
S+ ER SNK SRSR NKDWKGLV + EAP + + EVDN H+EEK RS VNR R
Sbjct: 121 SKSELERGNSNKFSRSRHNKDWKGLVKGEAEAPTIRSFEVDNAHVEEKVRSNVNRSRRSP 180
Query: 180 SPPSPVQRKRRRSVDQQKTKRDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXX 239
SP VQRKR R+ +QQ+ KRD SQV I APRRLLQFAVRDAV + R GT VE
Sbjct: 181 SPKPAVQRKRGRADEQQRPKRDVVSQVNIAAPRRLLQFAVRDAVGSPRTSGVGTSVEPYL 240
Query: 240 XXXXXXXXXXXXXXXXXEHPQRMQ-TTRVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRL 298
EH QR+Q T+R N + V+KAV EAAED VK K SGSVFDRL
Sbjct: 241 KRLRSVVSTSSADSSVVEHYQRVQPTSRAPNAMARVIKAVAEAAED-VKSKSSGSVFDRL 299
Query: 299 GCNINRSDGNRKLDDDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFLSDSTSDDEG 358
GC ++ S N +L DYQHQEQ+Q +YLQRTDY QYA N + + ET FLSDS SD+EG
Sbjct: 300 GCGMDSSADNSQL--DYQHQEQNQSMYLQRTDYNGQYAANTTMVERETVFLSDSNSDNEG 357
Query: 359 FDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDENVSLERNRDQEQSAVTPNT 418
DVNV+G V+ S++ SS GN+G DSLMV YSVAK D+++ L+++++QEQ N
Sbjct: 358 CHDVNVIGRGVTGTSEISSSVGNKGSDSLMVQYSVAKKADDSLRLKQSQEQEQPTAACNP 417
Query: 419 S-KIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGAPRSDPRLVKENARALKT 477
S KIVNISVNVNTWKP Q QEPR+V ELDG K ++ IG RS+ +LVKENA ALK
Sbjct: 418 SRKIVNISVNVNTWKPD---QYQEPREVVELDGHKISDNEIGDSRSNMQLVKENANALKI 474
Query: 478 NHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNK 537
++GNVN D++K KA T G S AG ED DSRTIF SNVHFAATKD LSRHFNK
Sbjct: 475 SNGNVNLAPDVQKESSKAH-CTPGSSVAGRPTEDVDSRTIFVSNVHFAATKDALSRHFNK 533
Query: 538 FGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILK 586
FGEVLKV+IVTDA TGQPKGAAYVEFM KEAADNALSLDGTSFMSRILK
Sbjct: 534 FGEVLKVIIVTDAATGQPKGAAYVEFMLKEAADNALSLDGTSFMSRILK 582
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/412 (61%), Positives = 288/412 (69%), Gaps = 36/412 (8%)
Query: 313 DDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFL----------------------- 349
+D Q+QE+S LY ++TDYGDQY NM+T HET F
Sbjct: 403 EDNQYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDFGDQ 462
Query: 350 ---------SDSTSDDEGFDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDEN 400
SDS+SD+EGFDDVN MG+RV R SQ SSGG RG+ SLM +YS AKNDD +
Sbjct: 463 YAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKNDD-S 521
Query: 401 VSLERNRDQEQSAVTPNTSKIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGA 460
+ L++NR+Q+QSA PN+SKIVNISVNVN W PP P Q +PRKVA+L G KTLNS A
Sbjct: 522 ILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGTRA 581
Query: 461 PRSDPRLVKENARALKTNHGNVNSTLDLKKAPPKAQLLT--AGPSAAGHLLEDADSRTIF 518
P+S +V ENA+ +K + G TLDL K KAQ T G SAA L+DADSRTIF
Sbjct: 582 PKSGLSMVNENAKTVKIDSGKAKPTLDLLKVTQKAQPSTPGTGSSAASCPLDDADSRTIF 641
Query: 519 ASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGT 578
ASNVHFAATKD + RHFNKFGEVLK VIVTD++TG+PKGAAYVEFM KEAADNALSLDGT
Sbjct: 642 ASNVHFAATKDAICRHFNKFGEVLKAVIVTDSITGKPKGAAYVEFMYKEAADNALSLDGT 701
Query: 579 SFMSRILKVVRKSAAPQE-YAPALPWPRGVRGSPFPSARFSRAPFPRGVVGAFSPRPPVK 637
SFMSRILKVVRKS A QE YAPA+PWP GVRGSP+PSARF +AP P G GAF PRPPVK
Sbjct: 702 SFMSRILKVVRKSTAQQEDYAPAVPWPSGVRGSPYPSARFLKAPIPAGTAGAFRPRPPVK 761
Query: 638 FGSRSLQWKRDAQGIXXXXXXXXXXXXXXXPGARGLTYVRTESKLDASLNST 689
FG+RSLQWKRDAQG P +RGLTYVR ESKLD SL +T
Sbjct: 762 FGARSLQWKRDAQGTSSDNSATLNNSSISTPVSRGLTYVRPESKLDGSLGTT 813
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 247/387 (63%), Gaps = 64/387 (16%)
Query: 1 MGSIDRSDRRKFRTDFTAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKDQ 60
MG+IDRSD R F+T+FT EG+AVL E +NEKLKE MGD TD+ LV YVIVLL+NG+ K+Q
Sbjct: 1 MGNIDRSDNRSFQTNFTDEGIAVLTETLNEKLKELMGD-TDEILVNYVIVLLKNGKAKNQ 59
Query: 61 AKNELNVFLGDDSDSFVAWLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHL 120
AKN+LN+FLGDDSDSFV+WLWDHLALNIDLYVQSK LQDEAPK K++S+ QAG D FQ L
Sbjct: 60 AKNDLNLFLGDDSDSFVSWLWDHLALNIDLYVQSKGLQDEAPKSKVLSKAQAGDDDFQSL 119
Query: 121 NSQSERVESNKLSRSRRNKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQS 180
N +SE V+ SRSRRNKDW GLVGRD EAP L + VDN+HL++KD+SKVN GP+ S
Sbjct: 120 NQKSESVK----SRSRRNKDWNGLVGRDAEAPPLLSFVVDNMHLDKKDQSKVNGGPKAPS 175
Query: 181 PPSPVQRK----------RRR--------------SVDQQKTKRDSGSQVTIHAPRRLLQ 216
PVQRK R+R +V+QQKTKRDS SQVTI APRRLLQ
Sbjct: 176 LAPPVQRKKGCAVEQQKVRKRGCAVEQQKTMKRGCAVEQQKTKRDSVSQVTIDAPRRLLQ 235
Query: 217 FAVRDAVATSRPYNSGTPVETXXXXXXXXXXXXXXXXXXXEHPQRMQTTRVANPTSTVLK 276
FAVRDAVA+S N GT VE EHP RMQT
Sbjct: 236 FAVRDAVASS---NLGTTVEPSLKRLRAAVSSSYVESSMVEHPHRMQTI----------- 281
Query: 277 AVPEAAEDAVKFKYSGSVFDRLGCNINRSDGNRKLDD---------------DYQHQEQS 321
+ VKFK SGS FD + C+I S GN +L+D D Q+QE+S
Sbjct: 282 ------SNLVKFKSSGSAFDPIDCDIYPSYGNVQLEDNQYQEESPYGNVQLEDNQYQEES 335
Query: 322 QLLYLQRTDYGDQYAGNMSTFQHETAF 348
LY ++ DY DQYA NM+ +ET F
Sbjct: 336 PFLYHEKNDYDDQYAANMTMLDYETGF 362
>Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487353-13490775 | 20130731
Length = 626
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 247/387 (63%), Gaps = 64/387 (16%)
Query: 1 MGSIDRSDRRKFRTDFTAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKDQ 60
MG+IDRSD R F+T+FT EG+AVL E +NEKLKE MGD TD+ LV YVIVLL+NG+ K+Q
Sbjct: 1 MGNIDRSDNRSFQTNFTDEGIAVLTETLNEKLKELMGD-TDEILVNYVIVLLKNGKAKNQ 59
Query: 61 AKNELNVFLGDDSDSFVAWLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHL 120
AKN+LN+FLGDDSDSFV+WLWDHLALNIDLYVQSK LQDEAPK K++S+ QAG D FQ L
Sbjct: 60 AKNDLNLFLGDDSDSFVSWLWDHLALNIDLYVQSKGLQDEAPKSKVLSKAQAGDDDFQSL 119
Query: 121 NSQSERVESNKLSRSRRNKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQS 180
N +SE V+ SRSRRNKDW GLVGRD EAP L + VDN+HL++KD+SKVN GP+ S
Sbjct: 120 NQKSESVK----SRSRRNKDWNGLVGRDAEAPPLLSFVVDNMHLDKKDQSKVNGGPKAPS 175
Query: 181 PPSPVQRK----------RRR--------------SVDQQKTKRDSGSQVTIHAPRRLLQ 216
PVQRK R+R +V+QQKTKRDS SQVTI APRRLLQ
Sbjct: 176 LAPPVQRKKGCAVEQQKVRKRGCAVEQQKTMKRGCAVEQQKTKRDSVSQVTIDAPRRLLQ 235
Query: 217 FAVRDAVATSRPYNSGTPVETXXXXXXXXXXXXXXXXXXXEHPQRMQTTRVANPTSTVLK 276
FAVRDAVA+S N GT VE EHP RMQT
Sbjct: 236 FAVRDAVASS---NLGTTVEPSLKRLRAAVSSSYVESSMVEHPHRMQTI----------- 281
Query: 277 AVPEAAEDAVKFKYSGSVFDRLGCNINRSDGNRKLDD---------------DYQHQEQS 321
+ VKFK SGS FD + C+I S GN +L+D D Q+QE+S
Sbjct: 282 ------SNLVKFKSSGSAFDPIDCDIYPSYGNVQLEDNQYQEESPYGNVQLEDNQYQEES 335
Query: 322 QLLYLQRTDYGDQYAGNMSTFQHETAF 348
LY ++ DY DQYA NM+ +ET F
Sbjct: 336 PFLYHEKNDYDDQYAANMTMLDYETGF 362
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 137/221 (61%), Gaps = 33/221 (14%)
Query: 313 DDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFL----------------------- 349
+D Q+QE+S LY ++TDYGDQY NM+T HET F
Sbjct: 403 EDNQYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDFGDQ 462
Query: 350 ---------SDSTSDDEGFDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDEN 400
SDS+SD+EGFDDVN MG+RV R SQ SSGG RG+ SLM +YS AKNDD +
Sbjct: 463 YAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKNDD-S 521
Query: 401 VSLERNRDQEQSAVTPNTSKIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGA 460
+ L++NR+Q+QSA PN+SKIVNISVNVN W PP P Q +PRKVA+L G KTLNS A
Sbjct: 522 ILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGTRA 581
Query: 461 PRSDPRLVKENARALKTNHGNVNSTLDLKKAPPKAQLLTAG 501
P+S +V ENA+ +K + G TLDL K KAQ T G
Sbjct: 582 PKSGLSMVNENAKTVKIDSGKAKPTLDLLKVTQKAQPSTPG 622
>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
chr1:32414624-32417752 | 20130731
Length = 187
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
++E A AL+ V + + P AG S + E+ D+R+I+ NV +A T
Sbjct: 54 IEEEASALREMQAKVEKEMGAVQDP-------AGSSVSQAEKEEVDARSIYVGNVDYACT 106
Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
+ + +HF G V +V I+TD GQPKG AYVEF+ +A NAL L+ T R LKV
Sbjct: 107 PEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
Query: 588 VRKSAAPQEYAPALPW----PRGVRG 609
+A + P L P G RG
Sbjct: 166 ----SAKRTNVPGLKQYGRRPAGFRG 187
>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
chr1:32414615-32419459 | 20130731
Length = 187
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
++E A AL+ V + + P AG S + E+ D+R+I+ NV +A T
Sbjct: 54 IEEEASALREMQAKVEKEMGAVQDP-------AGSSVSQAEKEEVDARSIYVGNVDYACT 106
Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
+ + +HF G V +V I+TD GQPKG AYVEF+ +A NAL L+ T R LKV
Sbjct: 107 PEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
Query: 588 VRKSAAPQEYAPALPW----PRGVRG 609
+A + P L P G RG
Sbjct: 166 ----SAKRTNVPGLKQYGRRPAGFRG 187
>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
chr1:32414624-32419295 | 20130731
Length = 187
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
++E A AL+ V + + P AG S + E+ D+R+I+ NV +A T
Sbjct: 54 IEEEASALREMQAKVEKEMGAVQDP-------AGSSVSQAEKEEVDARSIYVGNVDYACT 106
Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
+ + +HF G V +V I+TD GQPKG AYVEF+ +A NAL L+ T R LKV
Sbjct: 107 PEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
Query: 588 VRKSAAPQEYAPALPW----PRGVRG 609
+A + P L P G RG
Sbjct: 166 ----SAKRTNVPGLKQYGRRPAGFRG 187
>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
chr8:37630582-37636333 | 20130731
Length = 216
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
++E A AL+ H V + + P A +A+ E+AD+R++F NV +A T
Sbjct: 48 MEEEAAALREMHAKVEKEIGSVQDP-------ASVAASQENKEEADARSVFVGNVDYACT 100
Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
+ + +HF G V +V I+TD GQPKG AYVEF+ EA AL L + R LKV
Sbjct: 101 PEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVETEAVQEALLLSESELHGRQLKV 159
Query: 588 VRKSAAPQEYAPALPWPRGVRGSPFPSARFSR 619
+ K P + R R +P+ + F R
Sbjct: 160 LPKRTN----VPGMKQYRPRRFNPYMAYGFRR 187
>Medtr4g094260.1 | polyadenylate-binding protein II | HC |
chr4:37371600-37377016 | 20130731
Length = 199
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
+++ A ALK V + + P A SA+ E+ D+R+IF NV +A T
Sbjct: 28 MEDEAAALKEMQAKVEKEMGSVQDPANA-------SASQINREEVDARSIFVGNVDYACT 80
Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
+ + +HF G V +V I TD GQPKG AYVEF+ EA AL L+ + R LKV
Sbjct: 81 PEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV 139
Query: 588 VRK 590
K
Sbjct: 140 TAK 142
>Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29710530-29713176 | 20130731
Length = 283
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 500 AGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAA 559
AG S ED +R+I NVH+A T + +HF G V +V I+TD G+P+G A
Sbjct: 145 AGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKF-GRPEGFA 203
Query: 560 YVEFMSKEAADNALSLDGTSFMSRILKVVRKS 591
VEF+ +A NAL L+G+ R+L V K
Sbjct: 204 CVEFVEADAVQNALGLNGSELHGRLLNVSSKC 235
>Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29709858-29712924 | 20130731
Length = 292
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 500 AGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAA 559
AG S ED +R+I NVH+A T + +HF G V +V I+TD G+P+G A
Sbjct: 154 AGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKF-GRPEGFA 212
Query: 560 YVEFMSKEAADNALSLDGTSFMSRILKVVRKS 591
VEF+ +A NAL L+G+ R+L V K
Sbjct: 213 CVEFVEADAVQNALGLNGSELHGRLLNVSSKC 244
>Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr1:18949410-18945722 | 20130731
Length = 150
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 509 LEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEA 568
+E+ D+R+++ NV +A T + +HF G V +V I+ + PKG AYVEF + +A
Sbjct: 23 VEEVDARSVYVGNVDYACTAKVVKQHFQSCGIVSRVTILLNEYC-LPKGCAYVEFQNIDA 81
Query: 569 ADNALSLDGTSFMSRILKVVRK 590
AL L+ + R +KV K
Sbjct: 82 VPKALLLNESELYGRKIKVCAK 103
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 501 GPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAY 560
P+ +E++ S+T+F N+ F+ + + + F GEV+ V +D G+ KG +
Sbjct: 315 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGH 373
Query: 561 VEFMSKEAADNALSLDGTSFMSRILKV 587
VEF S EAA +AL ++G + R +++
Sbjct: 374 VEFASAEAAQSALEMNGQELLQRAVRL 400
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 501 GPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAY 560
P+ +E++ S+T+F N+ F+ + + + F GEV+ V +D G+ KG +
Sbjct: 350 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGH 408
Query: 561 VEFMSKEAADNALSLDGTSFMSRILKV 587
VEF S EAA +AL ++G + R +++
Sbjct: 409 VEFASAEAAQSALEMNGQELLQRAVRL 435
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 501 GPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAY 560
P+ +E++ S+T+F N+ F+ + + + F GEV+ V +D G+ KG +
Sbjct: 362 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGH 420
Query: 561 VEFMSKEAADNALSLDGTSFMSRILKV 587
VEF S EAA +AL ++G + R +++
Sbjct: 421 VEFASAEAAQSALEMNGQELLQRAVRL 447
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 502 PSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYV 561
P+ +E++ S+T+F N+ F+ + + + F GEV+ V +D G+ KG +V
Sbjct: 328 PNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHV 386
Query: 562 EFMSKEAADNALSLDGTSFMSRILKV 587
EF S EAA +AL ++G + R +++
Sbjct: 387 EFASAEAAQSALEMNGQELLQRAVRL 412
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 510 EDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAA 569
ED RT+F +N+ F + L + F+ FGEV V +T +P+G +++F + EAA
Sbjct: 493 EDDLHRTVFITNLPFELDTEELKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAA 552
Query: 570 DNALSLDGTSFMSRIL 585
DNA+S T+ IL
Sbjct: 553 DNAISTANTASGMGIL 568
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 511 DADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAAD 570
DA S+TI N+ ++ + + F GEV+ V TD G+ +G YVEF + EAA
Sbjct: 158 DAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTD-REGRFRGFGYVEFGTAEAAK 216
Query: 571 NALSLDGTSFMSRILKV---VRKSAAP 594
AL LD T ++R ++V + KS P
Sbjct: 217 KALKLDSTELLNRRMRVDIAIEKSGYP 243
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 517 IFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNAL-SL 575
+F N+ ++ T++ L HF++FG V + +V D T + KG AY+ F + E A AL
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 576 DGTSFMSRILKVVRKSAAPQEYAPALP 602
D + F R+L V+ PA+P
Sbjct: 391 DNSIFQGRLLHVM----------PAIP 407
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 517 IFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNAL-SL 575
+F N+ ++ T++ L HF++FG V +V +V D T + KG A++ F E A AL
Sbjct: 901 LFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEES 960
Query: 576 DGTSFMSRILKVV 588
D + F R+L V+
Sbjct: 961 DNSIFQGRLLHVI 973