Miyakogusa Predicted Gene

Lj3g3v0478010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0478010.1 Non Characterized Hit- tr|I3SC15|I3SC15_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,96.51,2e-38,U6
SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7,NULL; SMALL NUCLEAR
RIBONUCLEOPROTEIN,NULL; Sm-like ribonuc,CUFF.40880.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...   167   3e-42
Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   159   4e-40
Medtr7g104930.1 | small nuclear ribonucleoprotein | HC | chr7:42...    58   2e-09

>Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:23716677-23712044 | 20130731
          Length = 99

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/86 (98%), Positives = 85/86 (98%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TAQTRSLGLIVCRGTAVMLVSPTDGT 86
          T QTRSLGLIVCRGTAVMLVSPTDGT
Sbjct: 61 TDQTRSLGLIVCRGTAVMLVSPTDGT 86


>Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:13385203-13381118 | 20130731
          Length = 124

 Score =  159 bits (403), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 82/86 (95%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNL LDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLFLDEAVEFLRDPDDPLKT 60

Query: 61 TAQTRSLGLIVCRGTAVMLVSPTDGT 86
          T QTRSLGLI CRGTAVMLVSPTD T
Sbjct: 61 TDQTRSLGLIGCRGTAVMLVSPTDVT 86


>Medtr7g104930.1 | small nuclear ribonucleoprotein | HC |
          chr7:42544003-42542017 | 20130731
          Length = 80

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGL 69
          DL K++DK +Q+KL   R + GTL+G+DQ +NLV+D  VE             +   +G+
Sbjct: 9  DLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGM 59

Query: 70 IVCRGTAVMLVS 81
          +V RG +V+ V 
Sbjct: 60 VVIRGNSVVTVE 71