Miyakogusa Predicted Gene

Lj3g3v0463480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0463480.1 Non Characterized Hit- tr|D7LPV0|D7LPV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,71.15,0.000000000003,seg,NULL,
NODE_28965_length_487_cov_130.470230.path1.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g029530.1 | small G family protein/RhoGAP family protein |...   178   1e-45

>Medtr4g029530.1 | small G family protein/RhoGAP family protein | HC
           | chr4:10205411-10211456 | 20130731
          Length = 378

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 97/116 (83%)

Query: 1   MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSR 60
           MPS+ SPQWQ+KASGFFSSSGVKLKEA+ESAGTFVGEVTKDTKSNVAEVAG+VG+IVKSR
Sbjct: 1   MPSVISPQWQDKASGFFSSSGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGKVGTIVKSR 60

Query: 61  WTLLQQPSTRHAVQDKLISAAATTGSFLRRGISGTXXXXXXXXXXXXXXXXITAQK 116
           W  LQ+PSTRHAVQD++ISAAATTG+FLRRG+SGT                ITAQK
Sbjct: 61  WARLQEPSTRHAVQDRMISAAATTGAFLRRGLSGTKEKVVVGKSKVEEVAKITAQK 116