Miyakogusa Predicted Gene

Lj3g3v0462320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0462320.1 Non Characterized Hit- tr|I1N6G0|I1N6G0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,50.49,7e-18,seg,NULL,NODE_65340_length_1037_cov_19.540020.path2.1
         (188 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099670.1 | clathrin assembly protein | HC | chr3:45694398...   118   4e-27
Medtr8g089850.1 | clathrin assembly protein | HC | chr8:37489041...    60   1e-09
Medtr3g086670.1 | clathrin assembly protein | HC | chr3:39281681...    54   1e-07

>Medtr3g099670.1 | clathrin assembly protein | HC |
           chr3:45694398-45696506 | 20130731
          Length = 337

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 79/121 (65%), Gaps = 7/121 (5%)

Query: 62  QGSFRLQGHAXXXXXXXXXXXXXXSNFREDTDFESLELSSWVRWYAGVVEQRLTASRVLG 121
           QGSF L+                 S FR+D DFESL+LSSWVRWYA V+EQ LT SR+LG
Sbjct: 102 QGSFTLKDQLSCYPSYGGHNFLNLSTFRDDLDFESLQLSSWVRWYAAVLEQLLTVSRILG 161

Query: 122 YYLTSSNSSIEKKNCTQDSKSLVLKMSNTGLLYKLENMVVFVIQIGRVSESLHLQKNELV 181
           YYL +SN+++ KK+      SL+L  SN  LLYKLE +VVFV QI  V ESL LQK ELV
Sbjct: 162 YYL-NSNNNLSKKD------SLILNASNADLLYKLECLVVFVEQISGVPESLELQKTELV 214

Query: 182 Y 182
           Y
Sbjct: 215 Y 215


>Medtr8g089850.1 | clathrin assembly protein | HC |
           chr8:37489041-37487477 | 20130731
          Length = 326

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 11  ASQQRFPQLLAGRASTTQNRGFSAPPRVLASQTAAADGCSEMLLHPPQRCRQGSFRLQGH 70
           A+   F +LL  R   T N   +    ++     +                 GSF LQ  
Sbjct: 62  ATASSFLELLMDRLQNTNNAAVALKSLIIVHHIIS----------------HGSFILQDQ 105

Query: 71  AXXXXXXXXXXXXXXSNFREDTDFESLELSSWVRWYAGVVEQRLTASRVLGYYLTSSNSS 130
                          SNFR +T+  S ELS WVRW+A  +E  L  SR+LG++       
Sbjct: 106 LSVYPSTGGRNYLNLSNFRHNTNPTSWELSCWVRWFAQHIENLLCTSRILGFFF------ 159

Query: 131 IEKKNCTQDSKSLVLKMSNTGLLYKLENMVVFVIQIGRVSESLHLQK 177
           + K  C  D +  V  ++N GLL + +++V  V  I +  + +++ K
Sbjct: 160 LGKSLC--DGEERVSCLTNCGLLKEFDSLVTLVEGICKRPDQVNMNK 204


>Medtr3g086670.1 | clathrin assembly protein | HC |
           chr3:39281681-39280251 | 20130731
          Length = 328

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 27/164 (16%)

Query: 18  QLLAGRASTTQNRGFSAPPRVLASQTAAADGCSEMLLHPPQRCRQGSFRLQGHAXXXXXX 77
           +LL  R  TT N             +A A  C   L+      + G+F L+         
Sbjct: 68  ELLMDRLQTTHN-------------SAVALKC---LISVHHIVKHGTFILRDQLSVYPYT 111

Query: 78  XXXXXXXXSNFREDTDFESLELSSWVRWYAGVVEQRLTASRVLGYYLTSSNSSIEKKNCT 137
                   SNFR+ T   S ELSSWVRWYA  +E  L  SR LG++L    ++ EK    
Sbjct: 112 GGRNYLNLSNFRDKTSSISWELSSWVRWYAEYIENLLCTSRTLGFFL--GETTPEKG--- 166

Query: 138 QDSKSLVLKMSNTGLLYKLENMVVFVIQIGRVSESLHLQKNELV 181
                 V  ++N+ LL + ++++  +  IG+   +   ++N++V
Sbjct: 167 ------VSYLTNSDLLRETDSLLALMEGIGKKPNTPMSEQNKVV 204