Miyakogusa Predicted Gene
- Lj3g3v0462270.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0462270.1 tr|B9IKL1|B9IKL1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_809065 PE=4
SV=1,71.29,0,SUBFAMILY NOT NAMED,NULL; D-LACTATE DEHYDROGENASE,NULL;
FAD_binding_4,FAD linked oxidase,
N-terminal,NODE_60405_length_616_cov_127.275970.path2.1
(200 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g005540.1 | D-arabinono-1,4-lactone oxidase-like protein |... 198 2e-51
Medtr8g024560.1 | D-arabinono-1,4-lactone oxidase-like protein |... 189 1e-48
Medtr1g026710.1 | D-arabinono-1,4-lactone oxidase family protein... 169 2e-42
Medtr7g118095.1 | D-arabinono-1,4-lactone oxidase family protein... 103 9e-23
Medtr1g050360.1 | L-galactono-1,4-lactone dehydrogenase | HC | c... 50 2e-06
Medtr1g050360.2 | L-galactono-1,4-lactone dehydrogenase | HC | c... 50 2e-06
>Medtr5g005540.1 | D-arabinono-1,4-lactone oxidase-like protein | HC
| chr5:494235-489932 | 20130731
Length = 580
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 133/200 (66%), Gaps = 4/200 (2%)
Query: 3 PESPVQC--NQSGCTLLNSYGTWNDRKDCHALNVTYPTTEQQLHSAVSYAVQNHLKVKVV 60
P P+QC N + CT+ NS G + DR C A V YPTTE +L S V+ A +N+ KVKV
Sbjct: 25 PADPIQCSSNNTNCTITNSNGVFPDRSICRASEVMYPTTEAELISIVALASKNNRKVKVA 84
Query: 61 TKFSHTIPKLACPSSQANTLLISTEKYDTGIEIDAANLAVTVASGVGLRRLIDEVERGGF 120
T+FSH+IPKLACP N LLIST+ + +++D L +TV SGV LR +I E R
Sbjct: 85 TRFSHSIPKLACPDD--NGLLISTKNLNRVLKVDVKLLRMTVESGVTLREIISEAARFEM 142
Query: 121 SLVAAPYWEGVSVGGLISTGAHGSSWWGKGGAVHDHVLGISIVVPASKSEGYAKVLKLKA 180
+L PYW G+++GGLISTGAHGS+ WGKG AVH++V I IV PA +GYAKV L
Sbjct: 143 ALPNTPYWWGLTIGGLISTGAHGSTLWGKGSAVHEYVTHIRIVSPAGCEDGYAKVRNLNE 202
Query: 181 PDPLLNAAKLSLGVLGAISK 200
LNAA++SLGVLG IS+
Sbjct: 203 SHQDLNAARVSLGVLGVISQ 222
>Medtr8g024560.1 | D-arabinono-1,4-lactone oxidase-like protein | HC
| chr8:9063312-9072540 | 20130731
Length = 582
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 137/202 (67%), Gaps = 5/202 (2%)
Query: 3 PESPVQCNQSG---CTLLNSYGTWNDRKDCHALNVTYPTTEQQLHSAVSYAVQNHLKVKV 59
PE P++C+ S CT+ NSYG + DR C A V YPT+EQ+L S V+ A + +KVKV
Sbjct: 28 PEDPIKCSNSQNTTCTITNSYGMFPDRTICQASQVFYPTSEQELVSMVASASREKIKVKV 87
Query: 60 VTKFSHTIPKLACPSSQANTLLISTEKYDTGIEIDAANLAVTVASGVGLRRLIDEVERGG 119
T++SH++PKL CP +N +LIST+ + ++ID +T+ SGV L+++I+E + G
Sbjct: 88 ATRYSHSVPKLVCPED-SNGILISTKYLNKVVKIDVEEKTITLESGVTLKQIINEASKNG 146
Query: 120 FSLVAAPYWEGVSVGGLISTGAHGSSWWGKGGAVHDHVLGISIVVPASKSEGYAKVLKL- 178
+L PYW G+++GG+I TGAHGS+ GKG AVHD+V+ I IV P+ +GYAKV L
Sbjct: 147 LALPYTPYWYGLTIGGMIGTGAHGSTLSGKGSAVHDYVVEIRIVRPSDSDDGYAKVEILN 206
Query: 179 KAPDPLLNAAKLSLGVLGAISK 200
+ + NAAK+SLGVLG IS+
Sbjct: 207 EQNNEDFNAAKVSLGVLGVISQ 228
>Medtr1g026710.1 | D-arabinono-1,4-lactone oxidase family protein |
HC | chr1:8739654-8732791 | 20130731
Length = 510
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 89/96 (92%)
Query: 105 GVGLRRLIDEVERGGFSLVAAPYWEGVSVGGLISTGAHGSSWWGKGGAVHDHVLGISIVV 164
GV LR+LIDEVE+ GFSLVAAPYWEGV++GG+ISTG+HGSSWWGKGGA HDHV GISI+V
Sbjct: 56 GVKLRQLIDEVEKNGFSLVAAPYWEGVTIGGVISTGSHGSSWWGKGGAFHDHVFGISIIV 115
Query: 165 PASKSEGYAKVLKLKAPDPLLNAAKLSLGVLGAISK 200
P SKSEGYAKVL+L++ DPL NAAK+SLGVLGAISK
Sbjct: 116 PGSKSEGYAKVLRLESHDPLFNAAKVSLGVLGAISK 151
>Medtr7g118095.1 | D-arabinono-1,4-lactone oxidase family protein |
HC | chr7:49013316-49013774 | 20130731
Length = 152
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 3 PESPVQC--NQSGCTLLNSYGTWNDRKDCHALNVTYPTTEQQLHSAVSYAVQNHLKVKVV 60
PE P++C N + CT+ NS G + D+ C A V YPT+E +L S V+ A +N+ K+KV
Sbjct: 30 PEDPIKCSSNNTNCTITNSNGAFPDQSICKASEVVYPTSEVELISIVALASENNRKMKVA 89
Query: 61 TKFSHTIPKLACPSSQA-NTLLISTEKYDTGIEIDAANLAVTVASGVGLRRLIDE 114
T+FSH+IPKL CP N LL+ST+ + ++ID + ++V SGV LR++I E
Sbjct: 90 TRFSHSIPKLTCPDDDTQNGLLVSTKFLNNVLKIDVDAMTISVESGVTLRQIISE 144
>Medtr1g050360.1 | L-galactono-1,4-lactone dehydrogenase | HC |
chr1:19821208-19828709 | 20130731
Length = 603
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 81 LISTEKYDTGIEIDAANLAVTVASGVGLRRLIDEVERGGFSLVAAPYWEGVSVGGLISTG 140
+++ D+ +E+D V V +G+ +++L+D ++ G +L +GG+I G
Sbjct: 161 MVNLSLMDSILEVDKEKKIVRVQAGIRVQQLVDGIKEHGLTLQNFASIREQQIGGIIQVG 220
Query: 141 AHGSSWWGKGGAVHDHVLGISIVVPASKSEGYAKVLKLKAPDPLLNAAKLSLGVLGAISK 200
AHG+ + + + V+ + +V PA +G +V K K P+ L A+ LG LG +++
Sbjct: 221 AHGTG--ARLPPIDEQVIAMKLVTPA---KGTIEVSKEKDPE-LFYLARCGLGGLGVVAE 274
>Medtr1g050360.2 | L-galactono-1,4-lactone dehydrogenase | HC |
chr1:19821208-19828709 | 20130731
Length = 603
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 81 LISTEKYDTGIEIDAANLAVTVASGVGLRRLIDEVERGGFSLVAAPYWEGVSVGGLISTG 140
+++ D+ +E+D V V +G+ +++L+D ++ G +L +GG+I G
Sbjct: 161 MVNLSLMDSILEVDKEKKIVRVQAGIRVQQLVDGIKEHGLTLQNFASIREQQIGGIIQVG 220
Query: 141 AHGSSWWGKGGAVHDHVLGISIVVPASKSEGYAKVLKLKAPDPLLNAAKLSLGVLGAISK 200
AHG+ + + + V+ + +V PA +G +V K K P+ L A+ LG LG +++
Sbjct: 221 AHGTG--ARLPPIDEQVIAMKLVTPA---KGTIEVSKEKDPE-LFYLARCGLGGLGVVAE 274