Miyakogusa Predicted Gene

Lj3g3v0460930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0460930.1 Non Characterized Hit- tr|E0W1S0|E0W1S0_PEDHC
Transcription initiation factor TFIID subunit,
putativ,52.17,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,TAFII28-like protein; no description,Histone-fold;
Histon,NODE_22423_length_461_cov_104.694145.path2.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g047200.1 | transcription initiation factor TFIID, subunit...   203   2e-53
Medtr0085s0030.1 | hTAFII28-like motif protein | HC | scaffold00...   117   3e-27

>Medtr1g047200.1 | transcription initiation factor TFIID, subunit
           TAF11 | HC | chr1:17814615-17817715 | 20130731
          Length = 203

 Score =  203 bits (517), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 104/109 (95%)

Query: 1   MAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVVSGIAKMF 60
           MAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLL SITGTQKI+IPITI VSGIAK+F
Sbjct: 95  MAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLTSITGTQKISIPITIAVSGIAKVF 154

Query: 61  VGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR 109
           VGEVVETAR ++KERKE+GPIRPCHLREA+RRLKLEGK+FKR+  RLFR
Sbjct: 155 VGEVVETARTIMKERKETGPIRPCHLREAHRRLKLEGKIFKRTTSRLFR 203


>Medtr0085s0030.1 | hTAFII28-like motif protein | HC |
           scaffold0085:49006-52109 | 20130731
          Length = 160

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 1   MAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVVSGIAKMF 60
           MAKM +ILSQFT+EQMSRYESFRRAGFQKA M R+LASI GTQ ++ PITIVVSGIAKMF
Sbjct: 94  MAKMHSILSQFTDEQMSRYESFRRAGFQKAKMTRVLASIIGTQTVSQPITIVVSGIAKMF 153

Query: 61  VGEVVET 67
           VGEVVET
Sbjct: 154 VGEVVET 160