Miyakogusa Predicted Gene
- Lj3g3v0429680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0429680.1 Non Characterized Hit- tr|K3XQS7|K3XQS7_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,46.35,2e-18,VQ,VQ; seg,NULL,CUFF.40772.1
(232 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057... 179 3e-45
Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |... 131 5e-31
Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060... 105 3e-23
>Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057 |
20130731
Length = 246
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 135/195 (69%), Gaps = 16/195 (8%)
Query: 45 RSDSNPYPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKL------HLQDPVPSSRNFN 98
RSDSNPYPTT+VQADT++FKQVVQMLTGSS+TT P + QD +RNFN
Sbjct: 57 RSDSNPYPTTFVQADTTTFKQVVQMLTGSSETTSTTPTTTKPTTKPNQQQDLPQQTRNFN 116
Query: 99 IPPMKTAPKKQQQQGFKLYERRNYNNSLKNT-LIINTFMKPNSAEICRFX--XXXXXXXX 155
IPP+KTAPKKQ GFKLYERRN SLKN+ L++NT M PN ++ F
Sbjct: 117 IPPIKTAPKKQ---GFKLYERRN---SLKNSVLMLNTLM-PNFSQNSNFSPRKQQQEILS 169
Query: 156 XXXXDFPSLALSPVTPLNDDPFDKXXXXXXXXXXXXKAIADKGFYLHPSPMSTPRGFEPQ 215
DFPSLALSPVTPLNDDPFDK KAIA++G+YLHPSP++TPR EPQ
Sbjct: 170 PSLLDFPSLALSPVTPLNDDPFDKSSPSLGNSSEEDKAIAERGYYLHPSPITTPRDAEPQ 229
Query: 216 LLPLFPVTSPRVTES 230
LLPLFP++SPRV++S
Sbjct: 230 LLPLFPLSSPRVSQS 244
>Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |
20130731
Length = 264
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 103/191 (53%), Gaps = 29/191 (15%)
Query: 49 NPYPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKLHLQDPVPSSRNFNIPPMKTAPKK 108
NPYPTT+VQADT+SFKQVVQMLTGSS+T K A S ++ N NIPP K
Sbjct: 79 NPYPTTFVQADTTSFKQVVQMLTGSSETAKQASTS-------TKANHNHNIPPKK----- 126
Query: 109 QQQQGFKLYERRNYNNSLKNTLIINTFMKPNSAEICRFXXXXXXXXXXXXXDFPSLALSP 168
QQGFKLYERR NS L IN + P + DFPSL LSP
Sbjct: 127 --QQGFKLYERR---NSFHKNLNINPLLPPIFSNSTFSPRNKQEILSPSILDFPSLVLSP 181
Query: 169 VTPLNDDPFDKXXXXXXX----------XXXXXKAIADKGFYLHPSP--MSTPRGFEPQL 216
VTPL DPF++ KAI +KGF+LHPSP ST R EP+L
Sbjct: 182 VTPLIPDPFNRSGSSSSSSAARNGSSLDSLAEDKAIREKGFFLHPSPRAASTSRDSEPRL 241
Query: 217 LPLFPVTSPRV 227
LPLFP +SPR
Sbjct: 242 LPLFPTSSPRA 252
>Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060 |
20130731
Length = 244
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 106/200 (53%), Gaps = 32/200 (16%)
Query: 48 SNPYPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKLHLQDPVPSSRNFNIPPMKTAPK 107
NPYPTT+VQAD SSFKQVVQMLTGS++TT S + RN +IPP K+
Sbjct: 56 GNPYPTTFVQADPSSFKQVVQMLTGSTETTTKQTSSTSSNNN----LRN-HIPPKKS--- 107
Query: 108 KQQQQGFKLYERRNYNNSLKNTLIINTFM---KPNSAEICRFXXXXXXXXXXXXXDFPSL 164
GFKLYERR NSLKN L +N + NS F DFP+L
Sbjct: 108 -----GFKLYERR---NSLKN-LHLNPLLPVFSSNSNNPSSFSPRKPEILSPSILDFPAL 158
Query: 165 ALSPVTPLNDDPFDKXXXXXXX-----------XXXXXKAIADKGFYLHPSPMSTPRGFE 213
LSPVTPL DPF++ KAI +K F+LHPSP +TPR E
Sbjct: 159 VLSPVTPLIPDPFNRTTVSGHRCGNGSPKPVLNIEAEEKAIKEKKFFLHPSPSTTPRDSE 218
Query: 214 -PQLLPLFPVTSPRVTESPS 232
P+LLPLFP TSPR PS
Sbjct: 219 QPRLLPLFPTTSPRARLGPS 238