Miyakogusa Predicted Gene

Lj3g3v0429140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0429140.1 tr|D8U6K0|D8U6K0_VOLCA Plastid/chloroplast
ribosomal protein S20 OS=Volvox carteri GN=prpS20 PE=3
SV,47.2,2e-19,no description,Ribosomal protein S20;
Ribosomal_S20p,Ribosomal protein S20; Ribosomal_S20,Ribosomal
,CUFF.40751.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061350.1 | 30S ribosomal protein S20 | HC | chr8:21120546...   218   3e-57

>Medtr8g061350.1 | 30S ribosomal protein S20 | HC |
           chr8:21120546-21122437 | 20130731
          Length = 173

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 133/179 (74%), Gaps = 8/179 (4%)

Query: 1   MAAVSCSWLTLPSKFRDXXXXXXXXXXXXXXXXXXFCRNISHT-VFSQGSLSLSPVQRR- 58
           MA+VSCS L LPSK ++                    RNIS + V SQG+ SL+ VQRR 
Sbjct: 1   MASVSCSLLNLPSKMKNLTLTSSSNSGSLSFS-----RNISQSRVLSQGTFSLNTVQRRG 55

Query: 59  TLVVCEVVTKKKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQPE 118
            +VVCE   KK VDSAIK+A QAE+RR+YNKARKSEI+TR KKVLEALE LKKKSDAQ E
Sbjct: 56  VVVVCEAAPKK-VDSAIKKALQAERRRVYNKARKSEIRTRTKKVLEALELLKKKSDAQAE 114

Query: 119 EILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVEIHHGWYTPVSDGSV 177
           EI  IEK+IGEAYS+IDKA++VGTLHRNTG +RKSRLARRKK VEIHHGWY PV   SV
Sbjct: 115 EITSIEKMIGEAYSIIDKAVKVGTLHRNTGANRKSRLARRKKAVEIHHGWYAPVPQASV 173