Miyakogusa Predicted Gene

Lj3g3v0428960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428960.2 Non Characterized Hit- tr|I1KDP8|I1KDP8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41899
PE,75.78,0,seg,NULL; no description,NULL; RNase_T,Exonuclease, RNase
T/DNA polymerase III; Ribonuclease H-like,,CUFF.40732.2
         (323 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061030.1 | histone mRNA exonuclease | HC | chr8:21144124-...   467   e-132

>Medtr8g061030.1 | histone mRNA exonuclease | HC |
           chr8:21144124-21147648 | 20130731
          Length = 308

 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/254 (85%), Positives = 237/254 (93%)

Query: 69  KPMCLYHTQGKCTMMDDLIHLEKFNHDCSRELQVNSAELNKICPQNLDFFLVLDLEGKVE 128
           KPMCLYHTQGKCTMMDDL+HL+KFNHDCS+ELQVN A L+K+  QN DFFLVLDLEGKVE
Sbjct: 55  KPMCLYHTQGKCTMMDDLVHLDKFNHDCSKELQVNIAGLSKVHSQNHDFFLVLDLEGKVE 114

Query: 129 ILEFPVLKICAKTLQVEDIFHRFVRPTVMSEQRINEYIEGKYGKFGVDRVWHDTAIPFKE 188
           ILEFPVLKI AKTL+VEDIFHRFVRP+ MSEQRINEYIEGKYGK GVDRVWHDTAIPFKE
Sbjct: 115 ILEFPVLKISAKTLKVEDIFHRFVRPSNMSEQRINEYIEGKYGKIGVDRVWHDTAIPFKE 174

Query: 189 VIQEFEAWLMQHQLWMGGKLNRAAFVTCGNWDLKTKVPQQCEVSKIKLPPYFVEWINLKD 248
           VI+EFEAWL+Q +LW GG L+RAAFVTCGNWDLKTKVPQQCEVS+IK+PPYF+EWINLKD
Sbjct: 175 VIEEFEAWLVQQKLWTGGNLDRAAFVTCGNWDLKTKVPQQCEVSRIKVPPYFMEWINLKD 234

Query: 249 VYLNFYNRRATGMVTMVKELQIPLMGSHHLGIDDTKNIARVLQRMLIDGALIQITARRNP 308
           +YLNFYNRRATGMVTM+KELQ+PL+GSHHLGIDDTKNI RVLQ ML+DGALIQITARRNP
Sbjct: 235 IYLNFYNRRATGMVTMMKELQMPLVGSHHLGIDDTKNITRVLQHMLVDGALIQITARRNP 294

Query: 309 SSPGNVNFLFKNRI 322
            S   V+FLFKNRI
Sbjct: 295 KSLREVSFLFKNRI 308